Bioconductor RNASeqRData

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788

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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2.0k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Taufiq • 0

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653

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by yuhang • 0

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1.4k

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RNASeqRData TPM

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by prashali.bansal ▴ 10

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455

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RNASeq RNASeqData RNASeqRData

19 months ago marymshahi2021 • 0

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1.1k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

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584

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

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3.1k

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RNASeqRData

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by beslinail • 0

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775

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.1 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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866

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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854

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RNASeqRData limma RNASeq RNASeqR

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Rita • 0

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2.6k

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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724

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

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Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0

Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…

Comment: Finding DEGs by using edgeR by prity6459 • 0

Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …

Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …

Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k

Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…

Answer: Finding DEGs by using edgeR by Gordon Smyth 50k

I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…

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