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ROntoTools
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ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST
ROntoTools
KEGG
KEGGgraph
20 months ago
abf
▴ 30
0
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0
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1.3k
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Error with R package RontoTools regarding administrator issues downloading updated KEGG data
ROntoTools
Rstudio
bioconductor
administratorIssues
pathway analysis
8.5 years ago
svlachavas
▴ 830
0
votes
0
replies
1.5k
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Error in keggPathwayGraphs when updateCache = TRUE
Pathways
ROntoTools
Pathways
ROntoTools
9.7 years ago
Guest User
★ 13k
0
votes
7
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4.7k
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Simple pathway enrichment analysis for gene lists
Microarray
Category
gage
KEGGREST
ROntoTools
Microarray
Category
gage
KEGGREST
ROntoTools
updated 10.6 years ago by
Paul Shannon
▴ 470 • written 10.6 years ago by
enricoferrero
▴ 660
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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