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RRBS
•
reset
4
votes
5
replies
987
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.0 years ago
ingerslev
• 0
0
votes
2
replies
797
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
3.7 years ago
weichen-cls
• 0
0
votes
0
replies
714
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.7 years ago
i.s.castanho
• 0
0
votes
1
reply
586
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.0 years ago
i.s.castanho
• 0
5
votes
14
replies
1.9k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
ingerslev
• 0
0
votes
4
replies
2.1k
views
MethylKit read in issue
methykit
rrbs
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
bekah
▴ 40
0
votes
3
replies
1.4k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.0 years ago
l.eijssen
• 0
1
vote
4
replies
1.8k
views
Using SVA with RRBS data
sva
RRBS
updated 7.0 years ago by
Jeff Leek
▴ 650 • written 7.1 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.7k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 7.5 years ago by
dashbrook1
• 0 • written 8.7 years ago by
GFM
▴ 20
4
votes
2
replies
1.4k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
nhejazi
• 0
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
8.9 years ago
maria.maqueda
• 0
12 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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