Biostar RSEM

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RSEM tximport scRNAseq DESeq2

updated 3 days ago by Michael Love 37k • written 4 days ago by Kelen • 0

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limma RNASeq rsem Normalization

7 months ago svlachavas ▴ 800

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RSEM deseq2 expected_counts raw_counts

updated 12 months ago by Michael Love 37k • written 5.5 years ago by chudar.chudar ▴ 10

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Comment: cellCounts() function floating point error by Yang Liao ▴ 340

Thanks for the report but the error cannot be reproduced. We tested `Rsubread` 2.10.3 in `R` 4.2.0 and `Bioconductor` 3.15, and `cellCounts…

Comment: rtracklayer export GRangesList as gtf and change attributes by James • 0

I have found a way to export a GTF so that the 3rd column no longer lists **sequence_feature** but instead lists the feature, such as **exo…

Comment: Using Age or other numerical variable to model expression in deseq2 by swbarnes2 ★ 1.1k

You can import age and not make it a factor.

Comment: Using Age or other numerical variable to model expression in deseq2 by krushnach80 • 0

"Why is that" no as an example i was citing that.."certainly don't want to make the interaction between the nuisance variable and your vari…

Comment: Using Age or other numerical variable to model expression in deseq2 by James W. MacDonald 60k

You have to use age from that post? Why is that? It is rarely optimal to categorize age rather than use as a continuous variable. It takes …

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Scholar to James W. MacDonald 60k

Teacher to Michael Love 37k