Showing : RSEM • reset
1
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Problem in running DESeq from expected count data of Transcriptome by Trinity followed by RSEM
Tissue Spati RSEM deno DEseq2
23 days ago • updated 22 days ago shashank • 0
1
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4
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245
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How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2 when DEGs
limma edgeR RSEM
updated 10 weeks ago by 47k • written 10 weeks ago by ▴ 10
1
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2
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167
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Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2
DESeq2 limma edgeR RSEM
11 weeks ago Yang Shi ▴ 10
2
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3
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512
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Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
6 months ago mohammedtoufiq91 ▴ 10
0
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3
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347
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Differential Expression Analysis on RNAseq - RSEM expected_count from UCSC RNA-Seq toil recompute
DESeq2 Toil RSEM
7 months ago Niveditha ▴ 20
4
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5
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1.0k
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Which is the best type of data for correlation or survival analysis
TPM RNASeq RSEM DESeq2
updated 9 months ago by 40k • written 10 months ago by ▴ 10
5
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9
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922
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GSVA perfomed on RSEM Expected Count data
GSVA RNA-Seq RSEM Expected_Count
10 months ago Yang Shi ▴ 10
5
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6
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761
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Removing the duplicated genes before limma::voom by using limma::avereps
RSEM avereps voom limma RNASeq
10 months ago Yang Shi ▴ 10
2
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4
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515
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Doing normalization when using voom for DEG analysis?
limma RSEM voom Normalization
10 months ago Yang Shi ▴ 10
2
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8
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846
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RSEM - tximport; where is effective_length information used? Implications for scRNA?
RSEM tximport scRNAseq DESeq2
11 months ago Kelen ▴ 10
6
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13
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3.4k
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How to use RSEM value to find differentially expressed genes
RSEM limma edgeR voom normalization
updated 10 months ago by 47k • written 2.8 years ago by ▴ 60
11 results • Page 1 of 1
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Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10
Thank you! I think that makes much sense to me.
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Comment: Interpret plot from DiffBind by Chris • 0
Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?
Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k
lfa and gcatest have been reinstated.
Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710
How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…
Votes
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
A: Generating a proper TxDb instance from NCBI GFF Annotations File
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