Bioconductor RSEM

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RSEM

updated 5 months ago by Michael Love 43k • written 7.5 years ago by hs.lansdell ▴ 20

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Tissue Spati RSEM deno DEseq2

written 23 months ago by shashank • 0

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RSEM DESeq2

4 months ago NB • 0

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Answer: Gene Ontology (GO) Analysis by James W. MacDonald 68k

The main difference is that `enrichGO` fits a conventional hypergeometric test whereas `hyperGTest` allows you to do a conditional test as …

Comment: blockwiseModule crashes in the end and doesn't generate modules by drivingdirectionsonline • 0

Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…

Comment: DeSeq Strategies for run to run Replication by Michael Love 43k

You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…

Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

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C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

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