Showing : RSTUDIO • reset
0
votes
5
replies
2.9k
views
New Version of CummeRbund?
cummerbund rstudio
8.2 years ago lreiter • 0
0
votes
20
replies
6.0k
views
SummarizeOverlaps in R
summarizeoverlaps Bam rstudio
updated 8.8 years ago by ▴ 90 • written 8.8 years ago by ▴ 10
9
votes
11
replies
5.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 5 weeks ago by 3.8k • written 2.2 years ago by ▴ 40
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
7.5 years ago Jon Bråte ▴ 250
0
votes
4
replies
1.4k
views
problem in installing flowclust
rstudio flowclust
updated 6.9 years ago by 3.8k • written 6.9 years ago by • 0
0
votes
3
replies
1.3k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures rversion3.2.1 3.0 rstudio
8.6 years ago serpalma.v ▴ 60
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
6.4 years ago clarisbaby • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
0
votes
9
replies
2.4k
views
is AClust package still available?
Aclust Aclustering Rstudio Clusters
updated 8.7 years ago by ▴ 40 • written 8.7 years ago by ▴ 10
0
votes
3
replies
1.1k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
1
vote
3
replies
23k
views
Converting first column to rownames
rstudio
8.1 years ago John ▴ 30
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago • updated 6.8 years ago mszskb • 0
0
votes
1
reply
1.1k
views
What preprocessing needs to be done on the Experiment datasets
colon rstudio golubesets
updated 8.1 years ago by 65k • written 8.1 years ago by • 0
0
votes
2
replies
1.7k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation variantannotation rstudio
updated 8.1 years ago by ★ 6.8k • written 8.1 years ago by • 0
0
votes
4
replies
2.8k
views
Unable to install Rcpp package for genefo
Rcpp genefo linux linux mint Rstudio
updated 7.7 years ago by • 0 • written 7.7 years ago by • 0
2
votes
1
reply
4.5k
views
Reading fasta file with multiple sequences
multiple sequences bioconductor rstudio seqinr
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
2
replies
1.1k
views
Problem with cummeRbund
rstudio cummerbund
7.1 years ago sanathoi.guru • 0
2
votes
4
replies
1.6k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 7.0 years ago by ▴ 650 • written 7.0 years ago by • 0
0
votes
1
reply
1.1k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 6.9 years ago by ▴ 350 • written 6.9 years ago by • 0
0
votes
4
replies
2.9k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago • updated 2.6 years ago HELEN • 0
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 5.5 years ago by 41k • written 5.5 years ago by • 0
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
1
reply
2.3k
views
Upload error in RStudio running on Amazon - AMI
AMI RStudio upload error custom install
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by • 0
0
votes
3
replies
1.0k
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 9.0 years ago by ★ 8.2k • written 9.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Recent problem with biomaRt query
biomart biomaRt R rstudio
8.8 years ago nickp60 • 0
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 8.7 years ago by 41k • written 8.7 years ago by ▴ 10
1
vote
3
replies
3.5k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 8.6 years ago by 65k • written 8.6 years ago by ▴ 10
2
votes
5
replies
5.4k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 830
3
votes
7
replies
4.5k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Error viewing the data set Golub_Merge
golubEsets rstudio
updated 8.1 years ago by 65k • written 8.1 years ago by • 0
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
2
votes
1
reply
8.2k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 20
0
votes
1
reply
908
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
1
vote
7
replies
2.8k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.0 years ago Abby ▴ 10
1
vote
3
replies
435
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
2
votes
18
replies
3.1k
views
edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
0
votes
1
reply
746
views
Issue with installation of a package.
RStudio flowFDA
updated 18 months ago by ▴ 760 • written 18 months ago by • 0
2
votes
3
replies
470
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
4 months ago R_Page • 0
0
votes
1
reply
740
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
0
votes
1
reply
813
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 17 months ago by 65k • written 17 months ago by ▴ 430
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.6 years ago • updated 2.5 years ago Sonia • 0
0
votes
14
replies
4.0k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 18 months ago by • 0 • written 21 months ago by • 0
0
votes
1
reply
961
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
4
votes
5
replies
2.0k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 24 months ago by • 0
0
votes
1
reply
375
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
votes
2
replies
328
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
4 months ago yee • 0
0
votes
7
replies
1.5k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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