Showing : RSTUDIO • reset
0
votes
0
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220
views
RN to EC Mapping Not Working for Some Nodes
RStudio ggkegg
updated 3 months ago by 65k • written 3 months ago by • 0
2
votes
3
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470
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
4 months ago R_Page • 0
0
votes
2
replies
328
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
4 months ago yee • 0
1
vote
3
replies
437
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
2
votes
5
replies
729
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
5 months ago j_denton • 0
0
votes
7
replies
1.5k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
376
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
votes
1
reply
962
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
votes
2
replies
1.1k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 15 months ago by • 0 • written 17 months ago by • 0
0
votes
1
reply
813
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 17 months ago by 65k • written 17 months ago by ▴ 430
0
votes
1
reply
746
views
Issue with installation of a package.
RStudio flowFDA
updated 18 months ago by ▴ 760 • written 18 months ago by • 0
0
votes
14
replies
4.0k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 18 months ago by • 0 • written 21 months ago by • 0
4
votes
5
replies
2.0k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 24 months ago by • 0
0
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0
replies
1.1k
views
function GDCquery_Maf error
rstudio maftools
2.0 years ago misslubblys • 0
9
votes
11
replies
5.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 5 weeks ago by 3.8k • written 2.2 years ago by ▴ 40
0
votes
3
replies
1.4k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 10
0
votes
0
replies
623
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
2.4 years ago HELEN • 0
0
votes
1
reply
740
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
0
votes
0
replies
613
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
2.5 years ago HELEN • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.6 years ago • updated 2.5 years ago Sonia • 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
votes
4
replies
2.9k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago • updated 2.6 years ago HELEN • 0
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
1
vote
7
replies
2.8k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.0 years ago Abby ▴ 10
0
votes
1
reply
823
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
1
vote
5
replies
3.9k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.4 years ago by ★ 11k • written 3.4 years ago by • 0
0
votes
1
reply
908
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
2
votes
1
reply
8.2k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 20
0
votes
5
replies
1.6k
views
Using RStudio AMI with localhost
RStudio AWS AMI
4.8 years ago bio-explorer • 0
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
0
replies
1.7k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
5.0 years ago fatimarasool135 • 0
2
votes
4
replies
1.6k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 12 months ago by • 0 • written 5.4 years ago by • 0
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 5.5 years ago by 41k • written 5.5 years ago by • 0
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
reply
1.2k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 20
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
0
votes
0
replies
1.0k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
5.9 years ago arphatak • 0
1
vote
4
replies
1.6k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 6.1 years ago by ★ 6.5k • written 6.2 years ago by • 0
2
votes
4
replies
1.2k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 6.1 years ago by 65k • written 6.1 years ago by ▴ 10
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
6.4 years ago clarisbaby • 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
6.4 years ago biostR ▴ 10
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
6.6 years ago Luiz • 0
0
votes
1
reply
1.9k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
1
vote
1
reply
4.8k
views
MA plot in R
rstudio r plotMA
6.8 years ago g.k • 0
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago mszskb • 0
0
votes
4
replies
1.4k
views
problem in installing flowclust
rstudio flowclust
updated 6.9 years ago by 3.8k • written 6.9 years ago by • 0
0
votes
1
reply
1.1k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 6.9 years ago by ▴ 350 • written 6.9 years ago by • 0
2
votes
4
replies
1.6k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 7.0 years ago by ▴ 650 • written 7.0 years ago by • 0
50 results • Page 1 of 1
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Comment: DESeq2 setting significant p-value by Michael Love 41k
It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.
Comment: Input Question for deseq.r by ATpoint ★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Votes
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
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