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RSTUDIO
•
reset
0
votes
5
replies
2.3k
views
New Version of CummeRbund?
cummerbund
rstudio
6.5 years ago
lreiter
• 0
0
votes
20
replies
4.7k
views
SummarizeOverlaps in R
summarizeoverlaps
Bam
rstudio
updated 7.1 years ago by
Jake
▴ 90 • written 7.1 years ago by
Lillyhchen
▴ 10
8
votes
9
replies
1.1k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 6 months ago by
Hervé Pagès
15k • written 6 months ago by
jon.klonowski
▴ 40
3
votes
3
replies
14k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
5.8 years ago
Jon Bråte
▴ 190
0
votes
4
replies
914
views
problem in installing flowclust
rstudio
flowclust
updated 5.2 years ago by
shepherl
3.2k • written 5.2 years ago by
shadhiksk
• 0
0
votes
3
replies
867
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures
rversion3.2.1
3.0
rstudio
6.9 years ago
serpalma.v
▴ 60
0
votes
2
replies
2.4k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
4.7 years ago
clarisbaby
• 0
0
votes
5
replies
628
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 2.7 years ago by
altuna akalin
▴ 20 • written 2.7 years ago by
hwaterma
• 0
0
votes
9
replies
1.7k
views
is AClust package still available?
Aclust
Aclustering
Rstudio
Clusters
updated 7.0 years ago by
Nitish Kumar Mishra
▴ 30 • written 7.0 years ago by
Lillyhchen
▴ 10
0
votes
3
replies
839
views
Getting annotated and normalized data.
microarray
rstudio
annotation
updated 7.3 years ago by
James W. MacDonald
60k • written 7.3 years ago by
jslow
• 0
1
vote
3
replies
20k
views
Converting first column to rownames
rstudio
6.4 years ago
John
▴ 30
0
votes
3
replies
1.8k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
5.2 years ago
mszskb
• 0
0
votes
1
reply
829
views
What preprocessing needs to be done on the Experiment datasets
colon
rstudio
golubesets
updated 6.4 years ago by
James W. MacDonald
60k • written 6.4 years ago by
shramanathakur
• 0
0
votes
2
replies
1.3k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation
variantannotation
rstudio
updated 6.4 years ago by
Valerie Obenchain
★ 6.7k • written 6.4 years ago by
noor.suaini
• 0
0
votes
4
replies
1.9k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 6.0 years ago by
mfox
• 0 • written 6.0 years ago by
anjali.krishna1008
• 0
2
votes
1
reply
3.3k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Riot
• 0
0
votes
2
replies
747
views
Problem with cummeRbund
rstudio
cummerbund
5.4 years ago
sanathoi.guru
• 0
2
votes
4
replies
977
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error
diffbind
rstudio
abort
quit
updated 5.3 years ago by
Gord Brown
▴ 640 • written 5.3 years ago by
msabbag2
• 0
0
votes
1
reply
642
views
can a function outliers be applied for a flowframe?
bioconductor
flow cytometry
rstudio
updated 5.2 years ago by
SamGG
▴ 270 • written 5.2 years ago by
shadhiksk
• 0
3
votes
4
replies
296
views
DESeq2::plotPCA plotting error
RStudio
PCA
DESeq2
updated 3 months ago by
swbarnes2
★ 1.1k • written 3 months ago by
960942
• 0
0
votes
1
reply
1.4k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 4.1 years ago by
Michael Love
37k • written 4.1 years ago by
drumarsohail
• 0
0
votes
4
replies
992
views
New computer won't install DESeq2
deseq2
rstudio
install error
updated 3.8 years ago by
Michael Love
37k • written 3.8 years ago by
jyoung
• 0
1
vote
8
replies
2.0k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2
null
summarizedexperiment
rstudio
updated 3.1 years ago by
Martin Morgan
25k • written 3.1 years ago by
200dumplings
• 0
0
votes
1
reply
1.9k
views
Upload error in RStudio running on Amazon - AMI
AMI
RStudio
upload error
custom install
updated 7.6 years ago by
Dan Tenenbaum
★ 8.2k • written 7.6 years ago by
nicholas.provart
• 0
0
votes
3
replies
706
views
how to include System Call Results in Sweave PDF report ?
Sweave
rstudio
updated 7.3 years ago by
Dan Tenenbaum
★ 8.2k • written 7.3 years ago by
a.afshinfard
▴ 10
0
votes
1
reply
959
views
Recent problem with biomaRt query
biomart
biomaRt
R
rstudio
7.2 years ago
nickp60
• 0
0
votes
3
replies
1.6k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 7.0 years ago by
Michael Love
37k • written 7.0 years ago by
Lillyhchen
▴ 10
1
vote
3
replies
2.0k
views
Problem using display() function on RStudio
display
rstudio
annotationhub
updated 6.9 years ago by
James W. MacDonald
60k • written 6.9 years ago by
barashe
▴ 10
2
votes
5
replies
4.8k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR
rstudio
Rversion3.2.1
updated 6.9 years ago by
Dan Tenenbaum
★ 8.2k • written 6.9 years ago by
svlachavas
▴ 800
3
votes
7
replies
3.5k
views
goseq code after DESeq2 -NO IDEA!
goseq
DESEQ2
RSTUDIO
CODE
updated 6.8 years ago by
Steve Lianoglou
13k • written 6.8 years ago by
amyfm
▴ 10
0
votes
2
replies
770
views
Error viewing the data set Golub_Merge
golubEsets
rstudio
updated 6.4 years ago by
James W. MacDonald
60k • written 6.4 years ago by
shramanathakur
• 0
1
vote
1
reply
3.9k
views
MA plot in R
rstudio
r
plotMA
5.2 years ago
g.k
• 0
0
votes
1
reply
1.6k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor
rstudio
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
yog312
• 0
1
vote
4
replies
1.1k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 4.4 years ago by
Mike Smith
★ 5.7k • written 4.5 years ago by
mullpaul
• 0
2
votes
4
replies
718
views
R session terminates when trying to load affycoretools package
affycoretools
Rstudio
fatal error
updated 4.4 years ago by
James W. MacDonald
60k • written 4.4 years ago by
biostR
▴ 10
0
votes
1
reply
654
views
Install Bioconductor package locally/temporarily
R
rstudio
package installation
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
ariel
▴ 10
2
votes
2
replies
2.4k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio
heatmap.2
updated 4.0 years ago by
James W. MacDonald
60k • written 4.0 years ago by
austin.taylor
• 0
2
votes
1
reply
2.2k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
mcall
▴ 20
0
votes
1
reply
329
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 2.4 years ago by
shepherl
3.2k • written 2.4 years ago by
bwiley4
• 0
1
vote
7
replies
926
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
16 months ago • updated 15 months ago
Abby
▴ 10
0
votes
1
reply
1.2k
views
Unable to Install packages in R
rstudio
updated 11 months ago by
James W. MacDonald
60k • written 11 months ago by
Fiona
• 0
0
votes
4
replies
1.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
11 months ago
HELEN
• 0
0
votes
1
reply
231
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 9 months ago by
James W. MacDonald
60k • written 9 months ago by
HELEN
• 0
5
votes
15
replies
4.0k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 14 months ago by
Kevin Blighe
3.6k • written 14 months ago by
KOUSTAV
• 0
1
vote
5
replies
713
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2
RStudio
10 months ago
Sonia
• 0
0
votes
13
replies
440
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
4 weeks ago • updated 28 days ago
JoseR
• 0
2
votes
18
replies
2.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger
processamplicons
rstudio
updated 7.2 years ago by
Aaron Lun
★ 27k • written 7.2 years ago by
thomas.leete
• 0
0
votes
0
replies
332
views
function GDCquery_Maf error
rstudio
maftools
4 months ago
misslubblys
• 0
0
votes
4
replies
2.5k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
amyfm
▴ 10
0
votes
0
replies
687
views
Rstudio crashes when running monocole
monocole
single-cell
rstudio
5.3 years ago
Assa Yeroslaviz
★ 1.5k
50 results • Page
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Comment: DESeq2 LFC changes sign after adjusting for surrogates
by
Marie
• 0
Thanks a lot!
Comment: how to use Rsamtools to parse extra fields from STAR alignment
by
Jiping Wang
▴ 90
Thanks so much! That's exactly the solution I am looking for.
Comment: Mapping genome regions to gene symbols
by
michaelwegert
• 0
function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…
Comment: OPLS-DA: confidence interval for accuracy metric
by
etienne.thevenot
▴ 20
- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …
Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
Votes
Answer: error running UniProt.ws
error running UniProt.ws
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
how to use Rsamtools to parse extra fields from STAR alignment
Comment: how to use Rsamtools to parse extra fields from STAR alignment
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