Bioconductor RSTUDIO

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221

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RStudio ggkegg

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Ramirj49 • 0

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474

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Rstudio cDNA ensembldb NCBI

4 months ago R_Page • 0

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331

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Rstudio plotPCA DESeq2

4 months ago yee • 0

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AccNo OrgDb convert Organismname RStudio

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by j_denton • 0

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738

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RStudio convert ensembldb NCBI

5 months ago j_denton • 0

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error RStudio ggplot2 DESeq2

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by BioES • 0

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377

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by DrFizz • 0

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970

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scRNAseq RStudio DESeq2

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by DrFizz • 0

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 5 weeks ago by shepherl 3.8k • written 2.2 years ago by jon.klonowski ▴ 40

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 12 months ago by Shreyash • 0 • written 5.4 years ago by rtwest • 0

10 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k