Showing : RSTUDIO • reset
8
votes
9
replies
1.1k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 6 months ago by 15k • written 6 months ago by ▴ 40
5
votes
15
replies
4.0k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 14 months ago by 3.6k • written 14 months ago by • 0
3
votes
7
replies
3.5k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 6.8 years ago by 13k • written 6.8 years ago by ▴ 10
3
votes
4
replies
296
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
updated 3 months ago by ★ 1.1k • written 3 months ago by • 0
3
votes
6
replies
1.1k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 30
3
votes
3
replies
14k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
5.8 years ago Jon Bråte ▴ 190
3
votes
8
replies
20k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade Rstudio Bioconductor R3.2.2
6.7 years ago svlachavas ▴ 800
2
votes
18
replies
2.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 7.2 years ago by ★ 27k • written 7.2 years ago by • 0
2
votes
5
replies
4.8k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 6.9 years ago by ★ 8.2k • written 6.9 years ago by ▴ 800
2
votes
1
reply
3.3k
views
Reading fasta file with multiple sequences
multiple sequences bioconductor rstudio seqinr
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
2
votes
1
reply
2.2k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 2.8 years ago by 25k • written 2.8 years ago by ▴ 20
2
votes
4
replies
718
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 4.4 years ago by 60k • written 4.4 years ago by ▴ 10
2
votes
2
replies
2.4k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 4.0 years ago by 60k • written 4.0 years ago by • 0
2
votes
3
replies
705
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
3.7 years ago rtwest • 0
2
votes
4
replies
977
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 5.3 years ago by ▴ 640 • written 5.3 years ago by • 0
1
vote
8
replies
2.0k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 3.1 years ago by 25k • written 3.1 years ago by • 0
1
vote
5
replies
1.3k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 20 months ago by 11k • written 20 months ago by • 0
1
vote
1
reply
3.9k
views
MA plot in R
rstudio r plotMA
5.2 years ago g.k • 0
1
vote
7
replies
926
views
Error with hclust
dendrogram hclust textanalysis R RStudio
16 months ago • updated 15 months ago Abby ▴ 10
1
vote
3
replies
2.0k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 6.9 years ago by 60k • written 6.9 years ago by ▴ 10
1
vote
2
replies
828
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
4.7 years ago biostR ▴ 10
1
vote
4
replies
1.1k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 4.4 years ago by ★ 5.7k • written 4.5 years ago by • 0
1
vote
5
replies
713
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
10 months ago Sonia • 0
1
vote
3
replies
20k
views
Converting first column to rownames
rstudio
6.4 years ago John ▴ 30
0
votes
1
reply
1.6k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio
updated 5.0 years ago by 25k • written 5.0 years ago by • 0
0
votes
0
replies
896
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
4.9 years ago Luiz • 0
0
votes
2
replies
2.4k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
4.7 years ago clarisbaby • 0
0
votes
0
replies
661
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
4.2 years ago arphatak • 0
0
votes
1
reply
654
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
3.3 years ago fatimarasool135 • 0
0
votes
5
replies
811
views
Using RStudio AMI with localhost
RStudio AWS AMI
3.1 years ago bio-explorer • 0
0
votes
5
replies
628
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by • 0
0
votes
1
reply
329
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 2.4 years ago by 3.2k • written 2.4 years ago by • 0
0
votes
1
reply
320
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 17 months ago by ▴ 150 • written 18 months ago by • 0
0
votes
1
reply
1.2k
views
Unable to Install packages in R
rstudio
updated 11 months ago by 60k • written 11 months ago by • 0
0
votes
0
replies
196
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
9 months ago HELEN • 0
0
votes
4
replies
1.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
11 months ago HELEN • 0
0
votes
1
reply
231
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 9 months ago by 60k • written 9 months ago by • 0
0
votes
0
replies
332
views
function GDCquery_Maf error
rstudio maftools
4 months ago misslubblys • 0
0
votes
0
replies
177
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
9 months ago HELEN • 0
0
votes
13
replies
440
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
4 weeks ago • updated 28 days ago JoseR • 0
0
votes
3
replies
445
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 5 months ago by 21k • written 6 months ago by ▴ 10
0
votes
1
reply
1.4k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 4.1 years ago by 37k • written 4.1 years ago by • 0
0
votes
4
replies
992
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 3.8 years ago by 37k • written 3.8 years ago by • 0
0
votes
1
reply
1.9k
views
Upload error in RStudio running on Amazon - AMI
AMI RStudio upload error custom install
updated 7.6 years ago by ★ 8.2k • written 7.6 years ago by • 0
0
votes
3
replies
839
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 7.3 years ago by 60k • written 7.3 years ago by • 0
0
votes
3
replies
706
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 7.3 years ago by ★ 8.2k • written 7.3 years ago by ▴ 10
0
votes
1
reply
959
views
Recent problem with biomaRt query
biomart biomaRt R rstudio
7.2 years ago nickp60 • 0
0
votes
20
replies
4.7k
views
SummarizeOverlaps in R
summarizeoverlaps Bam rstudio
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by ▴ 10
0
votes
3
replies
1.6k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 7.0 years ago by 37k • written 7.0 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 LFC changes sign after adjusting for surrogates by Marie • 0
Thanks a lot!
Comment: how to use Rsamtools to parse extra fields from STAR alignment by Jiping Wang ▴ 90
Thanks so much! That's exactly the solution I am looking for.
Comment: Mapping genome regions to gene symbols by michaelwegert • 0
function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…
Comment: OPLS-DA: confidence interval for accuracy metric by etienne.thevenot ▴ 20
- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …
Comment: Data input for aracne2regulon function in viper package by xlal • 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
Votes
Answer: error running UniProt.ws
error running UniProt.ws
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
how to use Rsamtools to parse extra fields from STAR alignment
Comment: how to use Rsamtools to parse extra fields from STAR alignment
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