Showing : RUV • reset
3
votes
4
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3.1k
views
Single cells batch effects
RUV single cell batch effect
7.1 years ago ribioinfo ▴ 100
3
votes
2
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2.6k
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Normalisation before RUVg and RUV2?
ruvseq ruv
updated 9.0 years ago by ▴ 950 • written 9.0 years ago by ▴ 150
1
vote
9
replies
2.6k
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RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.0 years ago sergio.espeso-gil • 0
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
0
votes
1
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2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 7.2 years ago by ▴ 950 • written 7.3 years ago by • 0
1
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3
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2.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.7 years ago Nik Tuzov ▴ 80
0
votes
5
replies
2.2k
views
RUVseq for microRNAs
ruvseq ruv microrna
8.8 years ago • updated 8.7 years ago sergio.espeso-gil • 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
votes
1
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1.6k
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.0 years ago by ▴ 20 • written 4.7 years ago by ▴ 20
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv microarray
updated 8.8 years ago by ▴ 30 • written 8.9 years ago by ▴ 150
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
1
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2
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1.3k
views
RUV4 for microarrays
RUV4 RUV Microarray
3.0 years ago Antonio • 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 4.6 years ago by 41k • written 4.6 years ago by • 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.3 years ago carleshf ▴ 10
0
votes
0
replies
986
views
Has anyone used the RUV package for Microbiome data?
ruv
7.2 years ago sasha • 0
0
votes
3
replies
951
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
0
votes
0
replies
908
views
Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
6.8 years ago manish20072013 • 0
0
votes
0
replies
905
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
0
votes
0
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895
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
0
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885
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
20 results • Page 1 of 1
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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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