Showing : RUVNormalize • reset
0
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
22 months ago • updated 21 months ago Mohamed ▴ 30
2
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9
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2.5k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
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6
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1.4k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
8.0 years ago thomas.wolfe • 0
2
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1
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1.3k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 6.8 years ago by ▴ 950 • written 6.8 years ago by • 0
2
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1
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1.2k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ★ 1.5k
0
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2
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990
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 6.3 years ago by ★ 1.5k • written 6.3 years ago by • 0
1
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3
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2.2k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.7 years ago Nik Tuzov ▴ 80
1
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1
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1.3k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 8.8 years ago by ▴ 10 • written 8.8 years ago by ▴ 110
2
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1
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1.5k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
1
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2
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815
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
12 months ago AZ ▴ 30
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0
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1.3k
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
8.4 years ago thomas.wolfe • 0
0
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1
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608
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
5.5 years ago losik • 0
12 results • Page 1 of 1
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Answer: geneList error in clusterprofiler by Basti ▴ 750
Have a look at the documentation : https://www.rdocumentation.org/packages/clusterProfiler/versions/3.0.4/topics/gseGO geneList argument s…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks again for your answer, I will try to play a little bit with the parameters. Only one thing, my data are actually CpG methylation :)…
Comment: flowStats Search Error by tholmes • 0
Thank you so much!
Comment: what is the sampleFiles by James W. MacDonald 65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…
Votes
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
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