Bioconductor RUVNormalize

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 6.7 years ago by davide risso ▴ 950 • written 6.7 years ago by Nik Tuzov ▴ 80

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RUV ruvseq ruvr ruvnormalize single cell

6.7 years ago Nik Tuzov ▴ 80

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2.1k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

22 months ago Mohamed ▴ 30

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1.5k

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ruvseq RUV ruvnormalize ruvg

7.8 years ago anthonycolombo60 • 0

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1.4k

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normalization ruvseq ruvnormalize ruvs eda

8.0 years ago thomas.wolfe • 0

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1.3k

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rnaseq ruvnormalize normalization technical replicates

8.4 years ago thomas.wolfe • 0

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1.3k

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edger ruvseq rnaseq normalization ruvnormalize

updated 6.8 years ago by davide risso ▴ 950 • written 6.8 years ago by manish20072013 • 0

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1.3k

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ruvnormalize microarray normalization

updated 8.8 years ago by laurent.jacob ▴ 10 • written 8.9 years ago by Cornwell, Adam ▴ 110

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1.2k

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RUVNormalize Subsetting

updated 8.8 years ago by laurent.jacob ▴ 10 • written 8.9 years ago by Dario Strbenac ★ 1.5k

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995

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RUVnormalize limma corrected expression matrix microarray

updated 6.3 years ago by Dario Strbenac ★ 1.5k • written 6.3 years ago by massimo.acquaviva.78 • 0

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829

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

12 months ago AZ ▴ 30

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614

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RUVnormalize protein mi

5.5 years ago losik • 0

12 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Answer: How to retrieve gene ontology GO class from gene list?

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

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Teacher to Gordon Smyth 50k