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RUVSeq
•
reset
3
votes
6
replies
206
views
Surrogate variable analysis for paired RNA seq experiment
RUVSeq
sva
7 days ago
nhaus
▴ 30
3
votes
2
replies
258
views
Design matrix after RUVg correction
RUVSeq
limma
DifferentialExpression
10 weeks ago
Shaimaa Gamal
• 0
4
votes
3
replies
313
views
voom with quality weights after RUV correction
RUVSeq
limma
DifferentialExpression
updated 10 weeks ago by
Gordon Smyth
50k • written 10 weeks ago by
Shaimaa Gamal
• 0
2
votes
3
replies
332
views
TMM normalization after RUVg correction
RUVSeq
limma
DifferentialExpression
edgeR
Normalization
updated 10 weeks ago by
James W. MacDonald
65k • written 10 weeks ago by
Shaimaa Gamal
• 0
2
votes
5
replies
425
views
Batch-resolved visualization after RUVg normalization?
RUVSeq
3 months ago
ctlong
• 0
0
votes
6
replies
653
views
Unable to replicate figures of CBCS data after nSolver and RUVSeq normalization
RUVSeq
updated 4 months ago by
Michael Love
41k • written 5 months ago by
myrthevanbaardwijk
• 0
5
votes
9
replies
1.2k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 1 day ago by
Gordon Smyth
50k • written 6 months ago by
Jonathan
▴ 10
3
votes
5
replies
796
views
Getting batch corrected counts after RUVSeq
BatchEffect
RUVSeq
RNASeq
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Shashank
• 0
0
votes
4
replies
607
views
DESeq2 & RUVseq model matrix is less than full rank
RUVSeq
DESeq2
8 months ago
anne.hoffrichter
• 0
3
votes
12
replies
1.4k
views
Unwanted variation observed on PCA for transcript level data
salmon
RUVSeq
cqn
PCA
RNASeq
updated 12 months ago by
Michael Love
41k • written 12 months ago by
urwah
▴ 10
4
votes
16
replies
7.3k
views
Normalised counts from RUVg in RUVSeq
RUVg
ruvseq
rnaseq
updated 28 days ago by
Shaimaa Gamal
• 0 • written 8.9 years ago by
Pauly Lin
▴ 150
2
votes
4
replies
1.7k
views
RUVseq design matrix for first pass of edger
ruvseq
written 8.3 years ago by
tonja.r
▴ 80
12 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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