Showing : RUVnormalize • reset
1
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
5 months ago AZ ▴ 30
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4
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1.4k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
15 months ago Mohamed ▴ 20
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1
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499
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
4.9 years ago losik • 0
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2
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792
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 5.7 years ago by ★ 1.5k • written 5.7 years ago by • 0
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9
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2.2k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.1 years ago by ▴ 920 • written 6.1 years ago by ▴ 80
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3
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1.9k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.1 years ago Nik Tuzov ▴ 80
2
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1
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1.1k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 6.3 years ago by ▴ 920 • written 6.3 years ago by • 0
2
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1
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1.3k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.2 years ago anthonycolombo60 • 0
2
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6
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1.2k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
7.4 years ago thomas.wolfe • 0
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0
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1.1k
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
7.8 years ago thomas.wolfe • 0
1
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1
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1.1k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 8.2 years ago by ▴ 10 • written 8.3 years ago by ▴ 110
2
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1
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1.1k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.2 years ago by ▴ 10 • written 8.3 years ago by ★ 1.5k
12 results • Page 1 of 1
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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