Showing : RUVnormalize • reset
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
9 months ago Mohamed ▴ 10
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1
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413
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
4.4 years ago losik • 0
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2
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649
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 5.2 years ago by ★ 1.5k • written 5.2 years ago by • 0
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9
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 5.6 years ago by ▴ 920 • written 5.6 years ago by ▴ 80
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3
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
5.7 years ago Nik Tuzov ▴ 80
2
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1.0k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 5.8 years ago by ▴ 920 • written 5.8 years ago by • 0
2
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1
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1.2k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
6.7 years ago anthonycolombo60 • 0
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1.1k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
6.9 years ago thomas.wolfe • 0
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
7.3 years ago thomas.wolfe • 0
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1.0k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 7.8 years ago by ▴ 10 • written 7.8 years ago by ▴ 110
2
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1
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995
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 7.8 years ago by ▴ 10 • written 7.9 years ago by ★ 1.5k
11 results • Page 1 of 1
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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k
Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…
Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k
Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…
Comment: Full list of differential genes not obtained in topTable by Ankita • 0
thank you I tried it and it worked.
Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k
When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …
Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Meaning, something like the the below? filterByExpr (y)
Votes
Comment: Gene Onotology: Can't get the goana function to work
Answer: Unable to upload an App in shinyapps.io with bioconductor packages
Comment: Help with Error in DiffBind
A: How to deal with Affymetrix GeneChip probeids that map to multiple genes
Comment: Failed to install Biobase
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