Biostar RUVnormalize

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 5.6 years ago by davide risso ▴ 920 • written 5.6 years ago by Nik Tuzov ▴ 80

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1.1k

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normalization ruvseq ruvnormalize ruvs eda

6.9 years ago thomas.wolfe • 0

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645

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

9 months ago • updated 8 months ago Mohamed ▴ 10

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1.7k

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RUV ruvseq ruvr ruvnormalize single cell

5.6 years ago Nik Tuzov ▴ 80

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647

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RUVnormalize limma corrected expression matrix microarray

updated 5.2 years ago by Dario Strbenac ★ 1.5k • written 5.2 years ago by massimo.acquaviva.78 • 0

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1.0k

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edger ruvseq rnaseq normalization ruvnormalize

updated 5.8 years ago by davide risso ▴ 920 • written 5.8 years ago by manish20072013 • 0

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1.0k

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ruvnormalize microarray normalization

updated 7.7 years ago by laurent.jacob ▴ 10 • written 7.8 years ago by Cornwell, Adam ▴ 110

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1.2k

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ruvseq RUV ruvnormalize ruvg

6.7 years ago anthonycolombo60 • 0

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994

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RUVNormalize Subsetting

updated 7.7 years ago by laurent.jacob ▴ 10 • written 7.8 years ago by Dario Strbenac ★ 1.5k

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412

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RUVnormalize protein mi

4.4 years ago losik • 0

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1.0k

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rnaseq ruvnormalize normalization technical replicates

7.3 years ago thomas.wolfe • 0

11 results • Page 1 of 1

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Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData by helucro ▴ 50

Not familiar with the package, but why the `…$Treament` in the formula when the it’s `key_IP_mf.Treatment`?

Comment: Time-course, comparison of two groups by Gordon Smyth 47k

My suggestion was not to use splines, in which case it's all pretty easy. Splines don't offer any essential gains for your replicated exper…

Answer: Plot profiles for each group - spline analysis in edgeR by Gordon Smyth 47k

In order to plot fitted trends, you need to first extract fitted values or estimated coefficients from the edgeR fit. That is the only way …

Answer: Compare and filter three BAM files by swbarnes2 ★ 1.2k

If you think you have a mix of three different organisms in the ix, the better way to do this is to make one reference with all three genom…

Comment: enrichKEGG results for non-model organism by Aciole.D • 0

If anyone still wondering about this: You can filter your 'kegg' object based on a list of target pathways. Look at these fields: `kegg@…

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Answer: How edgeR estimate the common dispersion?

Comment: RUVr batch correction doubling number of DEGs

Answer: RUVr batch correction doubling number of DEGs

A: LogFC: how do you determine the cutoff for differentially expressed genes?

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