Showing : RUVnormalize • reset
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
7 weeks ago • updated 6 weeks ago Mohamed • 0
2
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9
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1.7k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 5.0 years ago by ▴ 890 • written 5.0 years ago by ▴ 70
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6
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964
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
6.3 years ago thomas.wolfe • 0
2
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1
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924
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 7.1 years ago by ▴ 10 • written 7.2 years ago by ★ 1.5k
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3
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1.5k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
5.0 years ago Nik Tuzov ▴ 70
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 4.6 years ago by ★ 1.5k • written 4.6 years ago by • 0
2
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1
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926
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 5.1 years ago by ▴ 890 • written 5.1 years ago by • 0
1
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1
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890
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 7.1 years ago by ▴ 10 • written 7.2 years ago by ▴ 110
2
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1
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1.0k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
6.1 years ago anthonycolombo60 • 0
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1
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344
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
3.8 years ago losik • 0
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0
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942
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
6.7 years ago thomas.wolfe • 0
11 results • Page 1 of 1
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Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws by James W. MacDonald 60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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