Showing : RUVnormalize • reset
2
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1.3k
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 6.8 years ago by ▴ 950 • written 6.8 years ago by • 0
2
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1
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1.2k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ★ 1.5k
2
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9
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2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
2
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6
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1.4k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
8.0 years ago thomas.wolfe • 0
2
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1
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1.5k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
1
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3
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2.2k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.7 years ago Nik Tuzov ▴ 80
1
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1
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1.3k
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ▴ 110
1
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2
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829
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
12 months ago AZ ▴ 30
0
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2
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994
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 6.3 years ago by ★ 1.5k • written 6.3 years ago by • 0
0
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1
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614
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
5.5 years ago losik • 0
0
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4
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2.1k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
22 months ago Mohamed ▴ 30
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0
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1.3k
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
8.4 years ago thomas.wolfe • 0
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
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C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
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