Showing : Rankprod • reset
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368
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Shifted volcano plot after RankProd
rankp RankProd
11 months ago Alessia • 0
1
vote
3
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1.0k
views
How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
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0
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797
views
RankProd RP function length error
rankprod rp gr2
updated 5.7 years ago by 41k • written 5.7 years ago by • 0
3
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2
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1.1k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 20
0
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7
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1.6k
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RankProd crashing - stability issues?
rankprod crash
6.8 years ago bhgyu ▴ 30
4
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6
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2.2k
views
Bioconductor open source policy
licenses rankprod
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
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0
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902
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Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
7.2 years ago ggyu1215 • 0
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0
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834
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How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
7.8 years ago johnanthonyholtjr • 0
0
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0
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954
views
Regarding the package RankProd
microarray rankprod
8.1 years ago sancharisircar24 • 0
1
vote
1
reply
977
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Problem using RankProd
rankprod
updated 8.5 years ago by 65k • written 8.5 years ago by • 0
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0
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1.3k
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RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
8.6 years ago horcsct ▴ 10
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0
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1.1k
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Combine RankProd output Tables (up & down)
RankProd
8.6 years ago horcsct ▴ 10
0
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0
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2.0k
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Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
8.8 years ago sumedharoy • 0
5
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2
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2.3k
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RankProd: Why are p-values=0?
rankprod p-value
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
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0
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1.2k
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Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
9.0 years ago svlachavas ▴ 830
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0
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892
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Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
9.7 years ago Guest User ★ 13k
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1
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1.4k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by 50k
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1
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1.6k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 190
0
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0
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868
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
10.0 years ago Stefanie Busch ▴ 30
0
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3
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2.3k
views
GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 30
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0
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1.2k
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Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
10.7 years ago Guest User ★ 13k
0
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0
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954
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Comparing human and mouse expression directly with RankProd
RankProd RankProd
11.3 years ago Cornwell, Adam ▴ 110
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0
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1.1k
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RankProd absurd results
qPCR RankProd qPCR RankProd
11.4 years ago Guest User ★ 13k
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0
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1.1k
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RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
11.4 years ago Guest User ★ 13k
0
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0
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1.1k
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RankProd paired-sample analysis
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
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0
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986
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RankProd package paired-sample sesign
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
0
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1
reply
1.1k
views
meta-analysis with RankProd
RankProd RankProd
updated 12.2 years ago by ▴ 720 • written 12.2 years ago by ▴ 40
0
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1
reply
1.2k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
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2
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1.5k
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Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
12.7 years ago boczniak767 ▴ 720
0
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0
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842
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Gene IDs returned by RankProd topGene command
RankProd RankProd
14.1 years ago Blumenberg, Miroslav ▴ 30
0
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2
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1.4k
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Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 20
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0
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1.2k
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Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
14.4 years ago Rohan M ▴ 20
0
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1
reply
974
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 10
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4
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1.5k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 15.2 years ago by ▴ 70 • written 15.2 years ago by ▴ 190
0
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2
replies
1.4k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 70
0
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0
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952
views
Rank Products- breast cancer
Cancer RankProd Cancer RankProd
15.9 years ago Eleni Christodoulou ▴ 150
0
votes
3
replies
1.8k
views
Error in RankProd package
limma RankProd limma RankProd
updated 17.1 years ago by ▴ 100 • written 17.1 years ago by ▴ 680
0
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0
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915
views
meaning of pfp in RankProd
RankProd RankProd
17.2 years ago Matthew McCormack ▴ 180
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0
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1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.4 years ago Kimpel, Mark W ▴ 890
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3
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1.3k
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 19.0 years ago by ▴ 340 • written 19.0 years ago by 50k
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0
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864
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A new package: RankProd
RankProd RankProd
19.1 years ago Fangxin Hong ▴ 810
41 results • Page 1 of 1
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Comment: Estimating Cell Counts for EPIC V2 array data by normawiedman059 • 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Comment: Finding DEGs by using edgeR by Gordon Smyth 50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR by prity6459 • 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
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Answer: OrgDb for maize
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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