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Rcurl
•
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2
votes
13
replies
3.3k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
10.2 years ago
lep
▴ 90
2
votes
8
replies
2.7k
views
BiomaRt and phytozome
biomaRT
Rcurl
phytozome
updated 5.8 years ago by
Mike Smith
★ 6.6k • written 5.8 years ago by
s.nielsen
▴ 20
0
votes
6
replies
3.2k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
farahqureshi5
• 0
3
votes
6
replies
3.4k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 7.5 years ago by
Wolfgang Huber
★ 13k • written 7.5 years ago by
Bernd Klaus
▴ 610
6
votes
5
replies
15k
views
Installation of package DESeq2
deseq2
rcurl
annotate
genefilter
geneplotter
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Rémi Willamme
▴ 10
19
votes
4
replies
6.0k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 9.4 years ago by
hygine
▴ 140 • written 9.4 years ago by
enricoferrero
▴ 680
2
votes
4
replies
10.0k
views
install RCurl in R
RCurl
9.7 years ago
yueli7
▴ 20
3
votes
2
replies
7.0k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 10.5 years ago by
Martin Morgan
25k • written 10.5 years ago by
dnajuice
▴ 20
8 results • Page
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Comment: Complex contrasts for between and within subject comparisons
by
wuwenhui2
• 0
@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…
Comment: edgeR design between and within subjects
by
wuwenhui2
• 0
@luna Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
by
Daniel
• 0
Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification
by
Michael Love
43k
Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Comment: Using tximport for kallisto aligned TOIL data
by
Nicholas
• 0
Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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