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Rcurl
•
reset
2
votes
13
replies
2.8k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
9.3 years ago
lep
▴ 90
2
votes
8
replies
2.0k
views
BiomaRt and phytozome
biomaRT
Rcurl
phytozome
updated 5.0 years ago by
Mike Smith
★ 6.5k • written 5.0 years ago by
s.nielsen
▴ 20
0
votes
6
replies
2.7k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
farahqureshi5
• 0
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.6 years ago by
Wolfgang Huber
★ 13k • written 6.6 years ago by
Bernd Klaus
▴ 610
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2
rcurl
annotate
genefilter
geneplotter
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Rémi Willamme
▴ 10
19
votes
4
replies
5.5k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 8.5 years ago by
hygine
▴ 140 • written 8.5 years ago by
enricoferrero
▴ 660
2
votes
4
replies
8.8k
views
install RCurl in R
RCurl
8.8 years ago
yueli7
▴ 20
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
dnajuice
▴ 20
8 results • Page
1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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