Bioconductor Rcurl

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6.0k

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biomart proxy rcurl

updated 9.4 years ago by hygine ▴ 140 • written 9.4 years ago by enricoferrero ▴ 680

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15k

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deseq2 rcurl annotate genefilter geneplotter

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Rémi Willamme ▴ 10

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Install cummerbund Rcurl xml

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by dnajuice ▴ 20

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3.4k

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arrayexpress xml rcurl http EBI

updated 7.5 years ago by Wolfgang Huber ★ 13k • written 7.5 years ago by Bernd Klaus ▴ 610

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3.3k

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scan.upc geoquery rcurl

10.2 years ago lep ▴ 90

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10.0k

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RCurl

9.7 years ago yueli7 ▴ 20

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biomaRT Rcurl phytozome

updated 5.8 years ago by Mike Smith ★ 6.6k • written 5.8 years ago by s.nielsen ▴ 20

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3.2k

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microarrays xml RCurl libxml2 libcurl

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by farahqureshi5 • 0

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Comment: Issue with DECIPHER::IdTaxa by Daniel • 0

The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…

Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by earntodiesaz • 0

I'm delighted to have the chance to engage in conversation with your blog; I'm looking forward to reading more posts that can be relied upo…

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by earntodiesaz • 0

To be honest with you, I must say that it was an exceptionally good post. Writing it down and reading it during my lunch break was a very e…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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