Bioconductor Reads

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584

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DiffBind Reads MACS2 FullLibSize

updated 8 weeks ago by Rory Stark ★ 5.2k • written 9 weeks ago by Marianna ▴ 20

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1.7k

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boxplot reads fastq sequencing rsubread

updated 5.3 years ago by Wei Shi ★ 3.6k • written 5.3 years ago by Raito92 ▴ 60

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1.1k

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rna-seq reads

updated 5.4 years ago by Gordon Smyth 51k • written 5.4 years ago by Ramiro Magno ▴ 100

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1.4k

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dexseq reads

7.3 years ago 514028929 • 0

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1.1k

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diffbind reads bamfiles

updated 7.5 years ago by Rory Stark ★ 5.2k • written 7.5 years ago by kbrnrc • 0

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1.9k

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genomicranges reads genomicfeatures Bam

9.5 years ago gen ▴ 30

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3.3k

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deseq filter reads

9.7 years ago ccheung • 0

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2.3k

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reads

updated 10.0 years ago by James W. MacDonald 67k • written 10.0 years ago by marcovth • 0

8 results • Page 1 of 1

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k