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News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.1 years ago by
shepherl
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News:
Nominations for Bioconductor Awards 2024!
Recognition
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Bioconductor
Bioc204
27 days ago
shepherl
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News:
Nominations for Bioconductor Awards 2024!
Recognition
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Bioconductor
Bioc2024
8 weeks ago • updated 6 weeks ago
shepherl
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News:
Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
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11 months ago
shepherl
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News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
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10 months ago
shepherl
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News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
11 months ago
shepherl
3.8k
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487
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News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
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News:
Bioconductor Community Engagement, Outreach, and Diversity Award
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Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.8k
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News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
11 months ago
shepherl
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Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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