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8
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0
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844
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News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
24 months ago
shepherl
3.8k
8
votes
0
replies
883
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.5 years ago
shepherl
3.8k
8
votes
1
reply
2.8k
views
News:
Bioconductor 3.5 is released
bioconductor
news
release
News
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Valerie Obenchain
★ 6.8k
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.0 years ago by
Valerie Obenchain
★ 6.8k
7
votes
6
replies
1.7k
views
How to obtain summary statistics for all Bioc releases
bioconductor
release
5.9 years ago
Robert Ivanek
▴ 730
6
votes
0
replies
1.9k
views
News:
Bioconductor 3.4 is released
news
announcement
release
News
7.5 years ago
Hervé Pagès
16k
6
votes
0
replies
847
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.5 years ago
shepherl
3.8k
5
votes
1
reply
420
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.8k
5
votes
0
replies
1.0k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago
shepherl
3.8k
5
votes
0
replies
961
views
News:
Bioconductor 3.6 is released
bioconductor
news
release
News
6.5 years ago
Valerie Obenchain
★ 6.8k
4
votes
0
replies
933
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.5 years ago
shepherl
3.8k
4
votes
3
replies
900
views
News:
Bioconductor 3.9 is released
bioconductor
release
News
5.0 years ago
shepherl
3.8k
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.5 years ago by
Valerie Obenchain
★ 6.8k
4
votes
0
replies
804
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
4.0 years ago
shepherl
3.8k
4
votes
0
replies
647
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
19 months ago
shepherl
3.8k
3
votes
0
replies
1.1k
views
News:
Bioconductor 3.3 is released
release
announcement
News
8.0 years ago
Dan Tenenbaum
★ 8.2k
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
8.9 years ago • updated 8.6 years ago
Karl Forner
▴ 70
3
votes
0
replies
1.2k
views
News:
Bioconductor 3.5 release
Bioconductor
release
news
News
7.1 years ago
Valerie Obenchain
★ 6.8k
3
votes
3
replies
1.5k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
Malcolm Cook
★ 1.6k
2
votes
0
replies
1.1k
views
News:
Bioconductor 3.9 release schedule
bioconductor
release
deadlines
News
5.1 years ago
shepherl
3.8k
2
votes
1
reply
1.3k
views
News:
Ensembl 91 is out!
ensembl
biomart
release
ensembl91
News
6.4 years ago
amonida
▴ 20
2
votes
0
replies
743
views
News:
New Package Submission Deadline for Bioc Release 3.8
release
package submission
News
5.6 years ago
shepherl
3.8k
2
votes
3
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.7 years ago
shepherl
3.8k
1
vote
0
replies
783
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
17 months ago
shepherl
3.8k
1
vote
3
replies
943
views
PureCN Release Notes
PureCN
Release
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
twtoal
▴ 10
1
vote
1
reply
982
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
6.0 years ago
shepherl
3.8k
1
vote
0
replies
368
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
7 months ago
kayla.interdonato
▴ 160
1
vote
0
replies
838
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.6 years ago
shepherl
3.8k
1
vote
0
replies
817
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.1 years ago
shepherl
3.8k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
1
vote
0
replies
819
views
News:
New Package Submission Deadline for Bioc Release 3.9
release
package submission
new packages
deadline
News
5.1 years ago
shepherl
3.8k
1
vote
0
replies
817
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.0 years ago
kayla.interdonato
▴ 160
1
vote
1
reply
1.2k
views
News:
Ensembl 90 has been released
ensembl
biomart
ensembl90
release
News
6.7 years ago
Thomas Maurel
▴ 800
1
vote
1
reply
1.0k
views
Rsync Access
release
rsync
873
updated 3.0 years ago by
Martin Morgan
25k • written 3.0 years ago by
workmanld
▴ 10
1
vote
1
reply
911
views
News:
Issues with annotation packages
annotation
news
release
News
4.0 years ago
kayla.interdonato
▴ 160
1
vote
1
reply
786
views
News:
Ensembl 94 has been released
biomart
release
ensembl
ensembl94
ensemblmart
News
5.6 years ago
Thomas Maurel
▴ 800
1
vote
0
replies
981
views
News:
New Package Submission Deadline for Bioc Release 3.12
release
new package
submission
deadline
News
3.6 years ago
shepherl
3.8k
1
vote
0
replies
997
views
News:
Deadline for devel branch 3.8 to pass R CMD build and R CMD check
deadline
release
devel
freeze
News
5.6 years ago
shepherl
3.8k
1
vote
0
replies
729
views
News:
Package Submission Deadline is TODAY!!
release
new submission
package submission
deadline
News
4.6 years ago
shepherl
3.8k
1
vote
0
replies
852
views
News:
Final List of Deprecated Packages for Bioc3.8
deprecate
release
News
5.6 years ago
shepherl
3.8k
1
vote
0
replies
765
views
News:
BioC 3.8 release schedule
bioconductor
release
news
News
5.6 years ago
Valerie Obenchain
★ 6.8k
1
vote
3
replies
1.2k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.8k
1
vote
0
replies
770
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
4.1 years ago
shepherl
3.8k
1
vote
2
replies
872
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
pertille
• 0
1
vote
4
replies
539
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 5 months ago by
Michael Love
41k • written 5 months ago by
Nadine
▴ 60
0
votes
1
reply
872
views
News:
List of Deprecated Packages for Bioc3.8
package
deprecate
release
news
News
5.9 years ago
shepherl
3.8k
0
votes
4
replies
1.5k
views
Why SPADE package has been removed from bioconductor?
spade
release
remove
clustering
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
a.n.horvath
• 0
0
votes
0
replies
913
views
News:
Bioconductor 3.6 release: stop commits to git.bioconductor.org
bioconductor
release
News
6.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
919
views
News:
Bioconductor 3.6 release: new package deadline
package submission
bioconductor
release
News
6.6 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
50 results • Page
1 of 1
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Replies
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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