Bioconductor Repitools

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repitools promoter tss annotation

6.1 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

7.0 years ago divyswar01 • 0

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878

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Baymeth methylation MBD-seq Repitools

7.9 years ago pm2015 • 0

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873

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repitools

8.7 years ago Matthias Lienhard ▴ 240

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985

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Dario Strbenac ★ 1.5k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Jaritz,Markus ▴ 20

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GO Repitools GO Repitools

updated 10.4 years ago by Dario Strbenac ★ 1.5k • written 10.4 years ago by Tim Smith ★ 1.1k

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limma Repitools limma Repitools

11.1 years ago Guest User ★ 13k

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Alignment convert Repitools Alignment convert Repitools

updated 4 months ago by Marge • 0 • written 11.3 years ago by José Luis Lavín ▴ 280

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1.7k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 12.4 years ago by Chao-Jen Wong ▴ 580 • written 12.4 years ago by Guest User ★ 13k

10 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700

> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…

Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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