Showing : Repitools • reset
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How to handle multi-TSS genes in Repitools?
repitools promoter tss annotation
4.2 years ago Ryan C. Thompson 7.8k
1
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2
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851
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cpgDensityCalc function in Repitools giving contradictory tools
repitools bioconductor cpgDensityCalc
5.1 years ago divyswar01 • 0
0
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0
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545
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
5.9 years ago pm2015 • 0
0
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0
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591
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SssI free analysis in BayMeth/Repitools
repitools
6.8 years ago Matthias Lienhard ▴ 220
0
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0
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652
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
8.2 years ago Dario Strbenac ★ 1.5k
0
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1.0k
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
8.2 years ago Jaritz,Markus ▴ 20
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5
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1.3k
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Graph of methylation data around TSS - Repitools or other package?
GO Repitools GO Repitools
updated 8.5 years ago by ★ 1.5k • written 8.5 years ago by ★ 1.1k
0
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0
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662
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Analysing grouped datasets in repitools
limma Repitools limma Repitools
9.2 years ago Guest User ★ 12k
0
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18
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4.5k
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BAM files to Genomic Ranges object
Alignment convert Repitools Alignment convert Repitools
updated 9.3 years ago by ★ 1.5k • written 9.4 years ago by ▴ 270
0
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3
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1.2k
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Repitools/ClusterPlots
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
updated 10.5 years ago by ▴ 580 • written 10.5 years ago by ★ 12k
10 results • Page 1 of 1
Recent ...
Replies
Answer: help understanding limma by Gordon Smyth 45k
It is obvious that you haven't exported and read the correct intensity data, as you admit yourself in your question. I don't know what the …
Answer: performing the differential binding in ChIP-seq by etiennedanis • 0
DiffBind https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k
Did you see the part of the vignette where we talk about this? https://bioconductor.org/packages/release/bioc/vignettes/fishpond/inst/doc/…
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Hi Michael, thanks for your reply. One more question. If the qvalue (and pvalue) for all DTEs are the same, the Volcano plot will look lik…
Comment: R: problem with running time-series analysis software: Mfuzz by soda ▴ 80
I have solved this problem by myself. My data.frame is not suitable for Mfuzz.
Votes
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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