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Repitools
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1.8k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.1 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.3k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.0 years ago
divyswar01
• 0
0
votes
0
replies
879
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
7.9 years ago
pm2015
• 0
0
votes
0
replies
875
views
SssI free analysis in BayMeth/Repitools
repitools
8.7 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
986
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.0k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.4 years ago by
Dario Strbenac
★ 1.5k • written 10.4 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
955
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.1 years ago
Guest User
★ 13k
0
votes
21
replies
6.5k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 4 months ago by
Marge
• 0 • written 11.3 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.7k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.5 years ago by
Chao-Jen Wong
▴ 580 • written 12.5 years ago by
Guest User
★ 13k
10 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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Peter Hickey
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sropri
• 0
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W. Evan Johnson
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Alejandro Reyes
★ 1.9k
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shepherl
3.8k
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