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Repitools
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BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 4 months ago by
Marge
• 0 • written 11.3 years ago by
José Luis Lavín
▴ 280
0
votes
5
replies
2.0k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.4 years ago by
Dario Strbenac
★ 1.5k • written 10.4 years ago by
Tim Smith
★ 1.1k
0
votes
3
replies
1.7k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.5 years ago by
Chao-Jen Wong
▴ 580 • written 12.5 years ago by
Guest User
★ 13k
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.1 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.3k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.0 years ago
divyswar01
• 0
0
votes
0
replies
1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.2 years ago
Jaritz,Markus
▴ 20
0
votes
0
replies
986
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
878
views
SssI free analysis in BayMeth/Repitools
repitools
8.7 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
879
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
7.9 years ago
pm2015
• 0
0
votes
0
replies
959
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.1 years ago
Guest User
★ 13k
10 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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