Showing : ReportingTools • reset
1
vote
6
replies
1.9k
views
Problem on annotation of Deseq2 on reportingtools
Deseq2 reportingtools
updated 9.4 years ago by ▴ 70 • written 9.4 years ago by ▴ 40
0
votes
12
replies
2.2k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
votes
7
replies
2.7k
views
[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 30
4
votes
6
replies
2.7k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 9.1 years ago by ▴ 150 • written 9.4 years ago by • 0
1
vote
4
replies
1.1k
views
Methods in ReportingTools
reportingtools
updated 8.6 years ago by ▴ 70 • written 8.6 years ago by • 0
0
votes
2
replies
1.4k
views
hwriter or reportingtools: open link in new tab?
hyperlink ReportingTools hwriter
9.0 years ago Wade Davis ▴ 60
0
votes
3
replies
1.0k
views
Error when installing ReportingTools
reportingtools
7.8 years ago • updated 7.7 years ago Asma rabe ▴ 290
1
vote
1
reply
1.1k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
votes
2
replies
1.6k
views
Question about ReportingTools used with DESeq2
GO BSgenome BSgenome ReportingTools DESeq2 GO BSgenome BSgenome ReportingTools DESeq2
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 80
2
votes
4
replies
1.2k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 7.8 years ago by 41k • written 7.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
ReportingTools package
ReportingTools ReportingTools
updated 10.5 years ago by ▴ 10 • written 10.5 years ago by ▴ 160
0
votes
3
replies
1.8k
views
ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 340
0
votes
5
replies
1.7k
views
ReportingTools error message
DESeq ReportingTools DESeq2 DESeq ReportingTools DESeq2
9.9 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
1.1k
views
ReportingTools does not work with PFAMHyperGResult object
reportingtools
updated 9.6 years ago by 1.6k • written 9.6 years ago by • 0
2
votes
3
replies
1.5k
views
HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 150
0
votes
8
replies
1.6k
views
ReportingTools include pvalue NA and comparissons
R reportingtools deseq2 pvalue coef
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 7.8 years ago by ★ 2.0k • written 7.8 years ago by ▴ 20
0
votes
4
replies
1.4k
views
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 20
2
votes
2
replies
1.1k
views
How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
3
votes
7
replies
1.9k
views
ReportingTools Segmentation fault
reportingtools reporting tools
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 20
1
vote
4
replies
853
views
ReportingTools publish(): no image when .modifyDF argument is included
ReportingTools
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
6
votes
1
reply
3.0k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
1
vote
1
reply
1.1k
views
How to add search functions and additional fields to the html file of DESeq2 results created with ReportingTools
ReportingTools deseq2 hwriter
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 30
0
votes
1
reply
1.5k
views
DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 8.0 years ago by 41k • written 8.0 years ago by • 0
0
votes
0
replies
1.2k
views
KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
10.1 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
reply
1.6k
views
ReportingTools: Error using packet 1 arguments must have same length
reportingtools
5.4 years ago mmokrejs • 0
0
votes
0
replies
1.2k
views
Change column width in ReportingTools
reportingtools
8.6 years ago benedikt.athmer • 0
0
votes
0
replies
850
views
ReportingTools: formatting html report
Alignment ReportingTools Alignment ReportingTools
10.9 years ago Gabriel Becker ▴ 70
0
votes
0
replies
2.0k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
11.3 years ago Malcolm Cook ★ 1.6k
0
votes
0
replies
1.6k
views
Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
7.5 years ago abass.conteh • 0
0
votes
0
replies
631
views
Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2
5.6 years ago trebbiano • 0
32 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Awards • All
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Locations • All
Germany, just now
Finland, 1 minute ago
France, 7 minutes ago
Japan, 8 minutes ago
Jerusalem, 10 minutes ago
Traffic: 951 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6