Bioconductor RforProteomics

Showing : RforProteomics • reset

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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715

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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958

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error RforProteomics Install

updated 3.4 years ago by Mike Smith ★ 6.5k • written 3.4 years ago by Phoebe • 0

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882

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RforProteomics

3.5 years ago yueli7 ▴ 20

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945

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rforproteomics proteomics msnid msnbase

4.1 years ago daniel.magnus.bader ▴ 40

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RforProteomics

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by jb3082 • 0

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msnbase rforproteomics

5.2 years ago fgol ▴ 10

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RforProteomics MSnbase

updated 5.3 years ago by Laurent Gatto 1.6k • written 5.3 years ago by fgol ▴ 10

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prostar proteomics rforproteomics annotationforge

updated 5.9 years ago by Samuel Wieczorek ▴ 10 • written 5.9 years ago by lolli.langan ▴ 20

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1.5k

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DEP missing value imputation proteomics rforproteomics

6.4 years ago • updated 6.2 years ago alex.gos90 ▴ 10

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1.4k

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msnbase duplicate rforproteomics

updated 6.2 years ago by Laurent Gatto 1.6k • written 6.2 years ago by joris.vanhoutven ▴ 10

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Bioc package installation rforproteomics

updated 8.1 years ago by Laurent Gatto 1.6k • written 8.1 years ago by sarahgrogan • 0

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Comment: How to retrieve gene ontology GO class? by bandconductor • 0

Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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