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RforProteomics
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6
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1.7k
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Protein quantification by MSnbase package
msnbase
rforproteomics
5.1 years ago
fgol
▴ 10
0
votes
5
replies
3.6k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
updated 5.2 years ago by
Laurent Gatto
1.6k • written 5.2 years ago by
fgol
▴ 10
0
votes
5
replies
672
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.2 years ago by
Laurent Gatto
1.6k • written 6.2 years ago by
joris.vanhoutven
▴ 10
1
vote
3
replies
1.3k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 5.8 years ago by
Samuel Wieczorek
▴ 10 • written 5.8 years ago by
lolli.langan
▴ 20
3
votes
2
replies
1.5k
views
DEP: Grouping Samples for missing value imputation
DEP
missing value imputation
proteomics
rforproteomics
6.3 years ago • updated 6.1 years ago
alex.gos90
▴ 10
0
votes
2
replies
857
views
normalize the SILAC light heavy value
RforProteomics
3.4 years ago
yueli7
▴ 20
0
votes
1
reply
1.0k
views
Installation of package RforProteomics had non-zero exit status? ERROR lazy loading failed for package 'RforProteomics'
RforProteomics
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
jb3082
• 0
0
votes
1
reply
1.5k
views
Errors installing RforProteomics
Bioc
package installation
rforproteomics
updated 8.1 years ago by
Laurent Gatto
1.6k • written 8.1 years ago by
sarahgrogan
• 0
2
votes
1
reply
917
views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.0 years ago
daniel.magnus.bader
▴ 40
1
vote
1
reply
934
views
Errors in installing RforProteomics package
error
RforProteomics
Install
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
Phoebe
• 0
0
votes
1
reply
526
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 8 months ago by
Laurent Gatto
1.6k • written 8 months ago by
mmvar
• 0
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
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50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
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65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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