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Ringo
•
reset
0
votes
2
replies
1.1k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing
Homo sapiens
probe
Ringo
Preprocessing
Homo sapiens
probe
Ringo
14.9 years ago
JEAN-YVES SGRO
▴ 20
0
votes
4
replies
1.6k
views
Using package Ringo to analyze Agilent Chip on chip array
Ringo
Ringo
12.0 years ago
Gabriel Wajnberg
▴ 60
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase
convert
sva
ringo
arrayqualitymetrics
updated 8.1 years ago by
Gordon Smyth
50k • written 8.1 years ago by
chris.rock
• 0
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast
probe
Ringo
Yeast
probe
Ringo
14.0 years ago
Noah Dowell
▴ 410
0
votes
2
replies
1.4k
views
Advice for ChIPchip-Analysis
Ringo
Ringo
14.8 years ago
Karin Zimmermann
▴ 20
0
votes
4
replies
1.4k
views
using smoothX in Ringo
probe
Ringo
probe
Ringo
updated 13.7 years ago by
Joern Toedling
▴ 450 • written 13.7 years ago by
Elizabeth Ashley
▴ 50
0
votes
2
replies
1.2k
views
Quantile normalization in Ringo package
Ringo
Ringo
updated 13.6 years ago by
Joern Toedling
▴ 450 • written 13.6 years ago by
Mohamed Lajnef
▴ 250
0
votes
2
replies
1.1k
views
Problem with Ringo
Ringo
Ringo
updated 14.7 years ago by
Wolfgang Huber
★ 13k • written 14.7 years ago by
Hari Easwaran
▴ 240
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.8 years ago
bruce.moran
▴ 30
0
votes
4
replies
1.4k
views
Ringo - finding enriched regions
Ringo
Ringo
updated 14.5 years ago by
Joern Toedling
▴ 450 • written 14.5 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
927
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.4 years ago by
Wolfgang Huber
★ 13k • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
963
views
Error using Ringos readNimblegen
Ringo
Ringo
updated 15.9 years ago by
Joern Toedling
▴ 730 • written 15.9 years ago by
Morten Hansen
▴ 10
0
votes
1
reply
1.1k
views
Question about RINGO and follow up analysis
Ringo
Ringo
updated 14.3 years ago by
Joern Toedling
▴ 450 • written 14.3 years ago by
Dr. Viviana Menzel
▴ 10
0
votes
2
replies
1.1k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt
Ringo
biomaRt
Ringo
updated 14.1 years ago by
Joern Toedling
▴ 450 • written 14.1 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 14.0 years ago by
Joern Toedling
▴ 450 • written 14.0 years ago by
Chris Fenton
▴ 80
0
votes
1
reply
967
views
Ringo and dye swaps
Ringo
Ringo
updated 13.7 years ago by
Joern Toedling
▴ 450 • written 13.7 years ago by
jbethune
▴ 10
0
votes
3
replies
1.2k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe
annotate
geneplotter
affy
vsn
Ringo
probe
annotate
geneplotter
affy
vsn
Ringo
updated 15.8 years ago by
Joern Toedling
▴ 730 • written 15.8 years ago by
Ulrike Goebel
▴ 110
0
votes
1
reply
1.1k
views
Ringo for Nimblegen ChIP-chip data in GEO
Normalization
Ringo
Normalization
Ringo
updated 13.5 years ago by
Wolfgang Huber
★ 13k • written 13.5 years ago by
Yong Li
▴ 190
0
votes
2
replies
1.6k
views
Ringo install fails on R 2.8.0
Ringo
Ringo
updated 15.5 years ago by
laurent
▴ 140 • written 15.5 years ago by
Mikko Arvas
▴ 90
0
votes
1
reply
1.3k
views
vsn normalization in Ringo package
Normalization
vsn
Ringo
Normalization
vsn
Ringo
updated 9.7 years ago by
Joern Toedling
▴ 10 • written 9.7 years ago by
Guest User
★ 13k
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.7 years ago
ashubiochem
• 0
2
votes
1
reply
1.1k
views
Ringo File Opening Error
Ringo
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
gauravgunjal
• 0
0
votes
4
replies
1.3k
views
Missing Autocorrelation in Ringo
Annotation
Cancer
Ringo
Annotation
Cancer
Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Torsten Waldminghaus
▴ 80
0
votes
1
reply
1.0k
views
Missing Autocorrelation in Ringo
probe
Ringo
probe
Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Torsten Waldminghaus
▴ 80
0
votes
4
replies
1.2k
views
Ringo package: error using computeRunningMedians function
Ringo
Ringo
updated 14.7 years ago by
Joern Toedling
▴ 450 • written 14.7 years ago by
Diego Villar
▴ 40
0
votes
0
replies
1.0k
views
Ringo/Starr genomeAnno Object Tips
Annotation
biomaRt
Ringo
Annotation
biomaRt
Ringo
14.3 years ago
Noah Dowell
▴ 410
0
votes
0
replies
1.2k
views
Using Ringo
Normalization
vsn
convert
Ringo
Normalization
vsn
convert
Ringo
16.7 years ago
Joern Toedling
▴ 730
0
votes
0
replies
951
views
Ringo package: error using computeRunningMedians function
Ringo
Ringo
14.6 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.1k
views
Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo
Ringo
14.6 years ago
Diego Villar
▴ 40
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH
probe
aCGH
snapCGH
Ringo
aCGH
probe
aCGH
snapCGH
Ringo
13.4 years ago
Adeolu Adewoye
▴ 40
0
votes
0
replies
985
views
Normalizing together Nimblegen arrays with different designs
Normalization
probe
limma
Ringo
Normalization
probe
limma
Ringo
13.1 years ago
Wlasiuk Battagliotti, Gabriela - wlasiuk
▴ 20
0
votes
0
replies
943
views
using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo
ACME
Ringo
ACME
12.9 years ago
Adeolu Adewoye
▴ 40
32 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none
by
Michael Love
41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Awards
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to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Scholar
to
Gordon Smyth
50k
Popular Question
to
taur.vil
• 0
Teacher
to
Yuan Tian
▴ 280
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