Showing : Ringo • reset
0
votes
4
replies
1.3k
views
Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 80
0
votes
4
replies
1.4k
views
using smoothX in Ringo
probe Ringo probe Ringo
updated 13.7 years ago by ▴ 450 • written 13.7 years ago by ▴ 50
0
votes
4
replies
1.6k
views
Using package Ringo to analyze Agilent Chip on chip array
Ringo Ringo
12.0 years ago Gabriel Wajnberg ▴ 60
0
votes
4
replies
1.4k
views
Ringo - finding enriched regions
Ringo Ringo
updated 14.5 years ago by ▴ 450 • written 14.5 years ago by ▴ 330
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma ringo starr
8.7 years ago ashubiochem • 0
0
votes
4
replies
1.2k
views
Ringo package: error using computeRunningMedians function
Ringo Ringo
updated 14.6 years ago by ▴ 450 • written 14.6 years ago by ▴ 40
0
votes
3
replies
1.2k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.8 years ago by ▴ 730 • written 15.8 years ago by ▴ 110
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.0 years ago • updated 13.9 years ago Noah Dowell ▴ 410
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
0
votes
2
replies
1.3k
views
Advice for ChIPchip-Analysis
Ringo Ringo
14.7 years ago Karin Zimmermann ▴ 20
0
votes
2
replies
1.1k
views
Problem with Ringo
Ringo Ringo
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 240
0
votes
2
replies
1.1k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 14.1 years ago by ▴ 450 • written 14.1 years ago by ★ 1.3k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.0 years ago by ▴ 80
0
votes
2
replies
1.6k
views
Ringo install fails on R 2.8.0
Ringo Ringo
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by ▴ 90
0
votes
2
replies
1.2k
views
Quantile normalization in Ringo package
Ringo Ringo
updated 13.6 years ago by ▴ 450 • written 13.6 years ago by ▴ 250
0
votes
2
replies
1.1k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
14.9 years ago JEAN-YVES SGRO ▴ 20
0
votes
1
reply
961
views
Error using Ringos readNimblegen
Ringo Ringo
updated 15.9 years ago by ▴ 730 • written 15.9 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Question about RINGO and follow up analysis
Ringo Ringo
updated 14.2 years ago by ▴ 450 • written 14.2 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Missing Autocorrelation in Ringo
probe Ringo probe Ringo
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Ringo for Nimblegen ChIP-chip data in GEO
Normalization Ringo Normalization Ringo
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 190
0
votes
1
reply
960
views
Ringo and dye swaps
Ringo Ringo
updated 13.7 years ago by ▴ 450 • written 13.7 years ago by ▴ 10
2
votes
1
reply
1.1k
views
Ringo File Opening Error
Ringo
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.8 years ago bruce.moran ▴ 30
0
votes
1
reply
1.3k
views
vsn normalization in Ringo package
Normalization vsn Ringo Normalization vsn Ringo
updated 9.7 years ago by ▴ 10 • written 9.7 years ago by ★ 13k
0
votes
1
reply
924
views
Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 410
0
votes
0
replies
1.0k
views
Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
14.3 years ago Noah Dowell ▴ 410
0
votes
0
replies
1.2k
views
Using Ringo
Normalization vsn convert Ringo Normalization vsn convert Ringo
16.7 years ago Joern Toedling ▴ 730
0
votes
0
replies
950
views
Ringo package: error using computeRunningMedians function
Ringo Ringo
14.6 years ago Joern Toedling ▴ 450
0
votes
0
replies
1.1k
views
Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo Ringo
14.6 years ago Diego Villar ▴ 40
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
0
votes
0
replies
983
views
Normalizing together Nimblegen arrays with different designs
Normalization probe limma Ringo Normalization probe limma Ringo
13.0 years ago Wlasiuk Battagliotti, Gabriela - wlasiuk ▴ 20
0
votes
0
replies
940
views
using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo ACME Ringo ACME
12.9 years ago Adeolu Adewoye ▴ 40
32 results • Page 1 of 1
Recent ...
Replies
Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700
> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
France, 3 minutes ago
Bangladesh, 25 minutes ago
United States, 38 minutes ago
WEHI, Melbourne, Australia, 57 minutes ago
United States, 1 hour ago
Traffic: 515 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6