Showing : RnBeads • reset
1
vote
9
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2.0k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 8.1 years ago by • 0 • written 8.1 years ago by • 0
2
votes
9
replies
1.7k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 2.1 years ago by • 0 • written 3.0 years ago by • 0
0
votes
2
replies
1.8k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.1 years ago Brian Smith ▴ 120
0
votes
2
replies
2.1k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 7.8 years ago by • 0 • written 8.3 years ago by • 0
1
vote
3
replies
1.1k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 4.5 years ago by ▴ 50 • written 4.5 years ago by ★ 1.1k
0
votes
1
reply
1.6k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.3 years ago schasse • 0
2
votes
3
replies
949
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 2.7 years ago by ▴ 50 • written 3.5 years ago by • 0
2
votes
4
replies
1.1k
views
How to launch the RnBeads Data Juggler?
RnBeads
2.8 years ago Federica ▴ 10
1
vote
2
replies
1.3k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 2.8 years ago by ▴ 10
2
votes
4
replies
2.2k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
8.4 years ago bmreilly • 0
1
vote
1
reply
1.6k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 8.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 120
1
vote
1
reply
712
views
How to export methylation tracks in bed format
RnBeads
updated 2.7 years ago by 64k • written 2.7 years ago by ▴ 10
0
votes
2
replies
2.0k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 6.7 years ago by 6.5k • written 6.7 years ago by ▴ 10
0
votes
3
replies
575
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 6 months ago by ▴ 740 • written 6 months ago by ▴ 10
0
votes
1
reply
1.1k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 8.0 years ago by • 0 • written 8.1 years ago by ▴ 40
0
votes
1
reply
1.2k
views
RnBeads data preprocessing error
RnBeads
updated 5.7 years ago by • 0 • written 6.1 years ago by • 0
0
votes
1
reply
1.4k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 8.0 years ago by • 0 • written 8.1 years ago by ▴ 120
4
votes
4
replies
2.7k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 7.7 years ago by 64k • written 7.8 years ago by ▴ 60
0
votes
3
replies
983
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 4.8 years ago by ▴ 50 • written 4.8 years ago by • 0
0
votes
0
replies
318
views
rnbeads inference
epigenetics RnBeads
10 months ago Jitendra ▴ 10
0
votes
0
replies
2.1k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
8.0 years ago areyoujokingme • 0
0
votes
8
replies
1.6k
views
error in RnBeads installation
Epigenetics RnBeads R
21 months ago • updated 20 months ago Jitendra ▴ 10
0
votes
3
replies
2.9k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
8.4 years ago bmreilly • 0
0
votes
2
replies
1.6k
views
rnBeads error for the report path
software error rnbeads
updated 8.2 years ago by ★ 8.2k • written 8.2 years ago by • 0
2
votes
7
replies
2.0k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.0 years ago areyoujokingme • 0
0
votes
2
replies
1.2k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
7.8 years ago areyoujokingme • 0
0
votes
0
replies
1.3k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
7.3 years ago rasii • 0
0
votes
0
replies
947
views
RnBeads, enrichment analysis
rnbeads
7.1 years ago gaiusjaugustus • 0
0
votes
0
replies
1.2k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
7.0 years ago Habil Zare ▴ 200
0
votes
0
replies
948
views
'type = genes' for RnBeads::meth() function
rnbeads
6.8 years ago Tom ▴ 10
0
votes
0
replies
968
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
6.2 years ago Theo • 0
1
vote
1
reply
1.3k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.1 years ago preethibagopi28 ▴ 10
0
votes
0
replies
925
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
5.8 years ago gabrielrfries • 0
0
votes
1
reply
985
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
5.6 years ago neuro3030 • 0
0
votes
2
replies
1.7k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
4.1 years ago Kathrin.Klee • 0
0
votes
0
replies
670
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
3.6 years ago caoy4g4 • 0
0
votes
0
replies
857
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
2.8 years ago D • 0
0
votes
0
replies
665
views
How to know the number of detected CpG islands with RnBeads
RnBeads
2.7 years ago Federica ▴ 10
0
votes
0
replies
592
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
20 months ago Jitendra ▴ 10
0
votes
0
replies
464
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
20 months ago Jitendra ▴ 10
40 results • Page 1 of 1
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Comment: Ensembl down??? by James W. MacDonald 64k
I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…
Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k
I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…
Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …
Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k
> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…
Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0
Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…
Votes
Answer: biomaRt not working - lazy table error
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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