Showing : Rna • reset
3
votes
6
replies
335
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
11 weeks ago • updated 10 weeks ago Sara • 0
0
votes
0
replies
97
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
3 months ago rridley3 • 0
0
votes
1
reply
171
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 4 months ago by ★ 2.1k • written 4 months ago by • 0
0
votes
2
replies
289
views
Rsubread align --R session aborts
RNA Alignment Rsubread
6 months ago • updated 5 months ago sreekalasn • 0
0
votes
0
replies
247
views
Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
5 months ago António Miguel de Jesus Domingues ▴ 490
2
votes
1
reply
298
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 7 months ago by 47k • written 7 months ago by • 0
1
vote
2
replies
478
views
Is it necessary to standardize Combat in R?
RNA Combat sva R
8 months ago takemoto • 0
1
vote
1
reply
311
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 11 months ago by ▴ 80 • written 11 months ago by ▴ 10
0
votes
1
reply
381
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 13 months ago by ★ 2.1k • written 13 months ago by • 0
0
votes
0
replies
310
views
Cross-cultivar RNA-seq analysis
RNA Normalization
21 months ago nancy • 0
0
votes
4
replies
688
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
22 months ago • updated 21 months ago Nirad • 0
0
votes
3
replies
1.1k
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 2.2 years ago by 47k • written 2.2 years ago by • 0
4
votes
3
replies
944
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 2.3 years ago by 62k • written 2.3 years ago by ▴ 20
2
votes
7
replies
645
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 2.7 years ago by 62k • written 2.7 years ago by • 0
1
vote
1
reply
382
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 2.8 years ago by 39k • written 2.8 years ago by • 0
0
votes
6
replies
575
views
Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 2.9 years ago by 39k • written 2.9 years ago by • 0
0
votes
0
replies
507
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
3.6 years ago jmaanaki • 0
1
vote
1
reply
731
views
how to filter genes in significant module?
RNA WGCNA filter
3.6 years ago modarzi ▴ 10
0
votes
2
replies
550
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 3.8 years ago by 39k • written 3.8 years ago by ▴ 10
2
votes
1
reply
456
views
DESeq2 statistic and design
deseq2 RNA
updated 3.8 years ago by 39k • written 3.8 years ago by ▴ 10
5
votes
5
replies
823
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 3.8 years ago by ★ 28k • written 3.9 years ago by ▴ 20
2
votes
3
replies
703
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 20
1
vote
0
replies
596
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
4.3 years ago l.brown ▴ 10
0
votes
0
replies
577
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
5.0 years ago fawazfebin ▴ 50
0
votes
1
reply
654
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 5.5 years ago by 39k • written 5.5 years ago by ▴ 20
0
votes
1
reply
1.1k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 5.5 years ago by 39k • written 5.5 years ago by ▴ 20
1
vote
1
reply
850
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 5.7 years ago by ▴ 400 • written 5.7 years ago by ▴ 30
5
votes
4
replies
927
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 40
3
votes
6
replies
1.4k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 5.8 years ago by 62k • written 5.8 years ago by ▴ 20
6
votes
5
replies
2.8k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 5.8 years ago by 47k • written 5.8 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
5.9 years ago Walter F. Baumann ▴ 10
3
votes
1
reply
1.3k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
0
votes
4
replies
4.4k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 6.9 years ago by 39k • written 6.9 years ago by • 0
0
votes
2
replies
972
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
8.3 years ago aristotele_m ▴ 30
34 results • Page 1 of 1
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Comment: Not able to download recount3 data by Niveditha ▴ 10
Not sure if this is a issue for which I need to create a ticket in the github link provided in the previous comment. Request you to confirm
Comment: Not able to download recount3 data by Niveditha ▴ 10
CURL command - curl https://www.sciserver.org/public-data/recount3/data/human/homes_index CURL command Works in the system with the follow…
Comment: Mutect version, matched normal and manual curation in PureCN by Ken C • 0
Hi Markus, Thanks for your previous help. I now have a particular question that I believe is related to manual curation of PureCN results,…
Comment: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by Tobias ▴ 40
I found a way that worked on my MacBook Pro and also on a Linux (Debian 10): ``` ##### multicore version ##### library(BiocParallel) null_…
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by James W. MacDonald 62k
You are already halfway to figuring this out for yourself. Here's how I would proceed. The argument 'BPPARAM' says something about 'opti…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
C: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
A: SGSeq: moving toward diffex from SGSeq analysis
SGSeq: moving toward diffex from SGSeq analysis
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