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Rna
•
reset
3
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6
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329
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
10 weeks ago • updated 9 weeks ago
Sara
• 0
0
votes
0
replies
94
views
Correct GFF3 translation for FeatureCounts
RNASeq
FeatureCounts
Rna
3 months ago
rridley3
• 0
0
votes
1
reply
168
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 4 months ago by
ATpoint
★ 2.1k • written 4 months ago by
Mohamed
• 0
0
votes
0
replies
244
views
Job:
Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData
RNA
DifferentialExpression
5 months ago
António Miguel de Jesus Domingues
▴ 490
0
votes
2
replies
286
views
Rsubread align --R session aborts
RNA
Alignment
Rsubread
5 months ago
sreekalasn
• 0
2
votes
1
reply
296
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 7 months ago by
Gordon Smyth
47k • written 7 months ago by
Mikołaj Mierzejewski
• 0
1
vote
2
replies
471
views
Is it necessary to standardize Combat in R?
RNA
Combat
sva
R
8 months ago
takemoto
• 0
1
vote
1
reply
310
views
Description of the headers obtained from the Eligos2 output
methylation
RNA
native
epitranscriptomics
updated 10 months ago by
tcalvo
▴ 80 • written 10 months ago by
megha.hs28
▴ 10
8 results • Page
1 of 1
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Comment: Ascona Workshop “Biological systems: from first principles to data-driven model
by
Wolfgang Huber
13k
Dear Liam, it's bi-annual, we just submitted a proposal. If it works out, it'll be in 2024, and as it looks now, in early September. Theme:…
Comment: IHW for multiple regression
by
Wolfgang Huber
13k
Indeed, for the two-sided t-test (and similar), the sign of the test statistic is independent of the p-value under the null hypothesis, and…
Comment: edgeR supports continuous covariates?
by
Jeffcgen2000
• 0
Hi Yunshun Chen and Gordon Smyth, does edgeR support mixed model? (https://en.wikipedia.org/wiki/Mixed_model)
Comment: find tandem repeats in DNA
by
me-nobody
• 0
OK. Thank you very much!
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Bernardo
• 0
Discussion for this question continuing on Biostars: https://www.biostars.org/p/9552419/
Votes
A: edgeR: exactTest, glmFIt or glmQLFit approach?
Answer: on which data type limma::removeBatchEffect can be applyed?
C: WGCNA: Understanding module-trait correlations
A: WGCNA: Understanding module-trait correlations
A: Differential expression analysis starting from TPM data
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elefth.pavlos
▴ 30
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Gordon Smyth
47k
Popular Question
to
ruben.drews
• 0
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luca.s
▴ 40
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Guido Hooiveld
★ 3.5k
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