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Rna
•
reset
5
votes
4
replies
845
views
Experiment design contrasts any time edgeR
DGE
rnaseq
RNA
edger
updated 5.3 years ago by
londonflavido
• 0 • written 5.3 years ago by
Pietro
▴ 30
0
votes
2
replies
893
views
Normalizzation indipentent data from RNAAeq experiment
rna
normalization
7.9 years ago
aristotele_m
▴ 30
3
votes
1
reply
1.2k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR
deseq2
RNA
differential expression
updated 5.9 years ago by
Aaron Lun
★ 27k • written 5.9 years ago by
tyssowski
• 0
6
votes
5
replies
2.6k
views
Clustering differential expression results from voomWithQualityWeights
RNA
limma
rsem
edgeR
updated 5.3 years ago by
Gordon Smyth
46k • written 5.3 years ago by
hrishi27n
▴ 20
3
votes
6
replies
1.3k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA
rna-seq
science
bioinformatics
updated 5.3 years ago by
James W. MacDonald
60k • written 5.3 years ago by
hrishi27n
▴ 20
1
vote
1
reply
766
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 5.2 years ago by
chris86
▴ 400 • written 5.2 years ago by
bhgyu
▴ 30
0
votes
1
reply
1.0k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2
RNA
rnaseq
updated 5.0 years ago by
Michael Love
37k • written 5.0 years ago by
hrishi27n
▴ 20
0
votes
1
reply
592
views
Time series comparison with DESEQ2
RNA
rnaseq
deseq2
updated 5.0 years ago by
Michael Love
37k • written 5.0 years ago by
hrishi27n
▴ 20
0
votes
1
reply
246
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 7 months ago by
ATpoint
★ 1.4k • written 7 months ago by
st3472
• 0
0
votes
4
replies
4.2k
views
RNAseq Adjusting for Covariates?
RNA
rnaseq
Covariate
adjustment
deseq
updated 6.5 years ago by
Michael Love
37k • written 6.5 years ago by
sjs0282
• 0
2
votes
7
replies
510
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 2.2 years ago by
James W. MacDonald
60k • written 2.2 years ago by
Marco_aurelio
• 0
4
votes
3
replies
718
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation
rna
updated 22 months ago by
James W. MacDonald
60k • written 22 months ago by
anthony.nash
▴ 20
0
votes
3
replies
657
views
Pearson correlation between gene expression and phenotype
edgeR
RNASeq
updated 21 months ago by
Gordon Smyth
46k • written 21 months ago by
weichengz
• 0
2
votes
1
reply
140
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 8 weeks ago by
Gordon Smyth
46k • written 8 weeks ago by
Mikołaj Mierzejewski
• 0
0
votes
4
replies
537
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma
edgeR
rna
16 months ago
Nirad
• 0
1
vote
1
reply
183
views
Description of the headers obtained from the Eligos2 output
methylation
RNA
native
epitranscriptomics
updated 5 months ago by
tcalvo
▴ 70 • written 5 months ago by
megha.hs28
▴ 10
1
vote
2
replies
234
views
Is it necessary to standardize Combat in R?
RNA
Combat
sva
R
12 weeks ago • updated 11 weeks ago
takemoto
• 0
2
votes
3
replies
626
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq
rna
updated 3.4 years ago by
Steve Lianoglou
13k • written 3.4 years ago by
Anthony Nash
▴ 20
5
votes
5
replies
674
views
Association analysis between gene expression and Phenotype
rna
singlecell
limma
updated 3.4 years ago by
Aaron Lun
★ 27k • written 3.4 years ago by
hrishi27n
▴ 20
2
votes
1
reply
370
views
DESeq2 statistic and design
deseq2
RNA
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
Merlin
▴ 10
0
votes
2
replies
473
views
DESeq and checkFullRank(modelMatrix)
RNA
DESeq2
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
Merlin
▴ 10
0
votes
6
replies
434
views
Bizarre Dispersion Plots
deseq2
RNA
RNASeq
updated 2.4 years ago by
Michael Love
37k • written 2.4 years ago by
stephen.hartley
• 0
1
vote
1
reply
289
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2
RNA
updated 2.3 years ago by
Michael Love
37k • written 2.3 years ago by
agsousa
• 0
0
votes
0
replies
508
views
R code for finding wobble/redundant positions in an RNA string
r
code
rna
wobble
4.5 years ago
fawazfebin
▴ 50
1
vote
0
replies
527
views
Job:
1 Computational Biologist and 1 Molecular Biologist
computational biology
molecular biology
RNA
r-loop
ncRNA
Job
3.8 years ago
l.brown
▴ 10
0
votes
0
replies
420
views
Job:
Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell
RNA
Data analysis
Bioinformatics
Job
3.1 years ago
jmaanaki
• 0
0
votes
1
reply
87
views
Rsubread align --R session aborts
RNA
Alignment
Rsubread
updated 8 days ago by
Wei Shi
★ 3.5k • written 9 days ago by
sreekalasn
• 0
0
votes
0
replies
923
views
Finding candidate binding sites for RNA binding proteins in R
R
bioconductor
RNA
mRNA
RNA binding proteins
5.4 years ago
Walter F. Baumann
▴ 10
0
votes
0
replies
236
views
Cross-cultivar RNA-seq analysis
RNA
Normalization
15 months ago
nancy
• 0
1
vote
1
reply
539
views
how to filter genes in significant module?
RNA
WGCNA
filter
3.1 years ago
modarzi
▴ 10
30 results • Page
1 of 1
Recent ...
Replies
Comment: IsoformSwitchAnalyzeR package on mouse data
by
bpshtiwan
▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws
by
James W. MacDonald
60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks
by
Tiago C. Silva
▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks
by
Marcel Ramos
570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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46k
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Leonardo Collado Torres
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