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RnaSeqSampleSize
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413
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
4 months ago
drewhaydensteele
• 0
3
votes
1
reply
249
views
Dataset imbalance
RNASeq
DifferentialExpression
RnaSeqSampleSizeData
RnaSeqSampleSize
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Shaimaa Gamal
• 0
0
votes
1
reply
317
views
Interaction terms in DESeq2
RNASeqData
RnaSeqSampleSize
DESeq2
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
Mimi
• 0
0
votes
1
reply
390
views
Sample size estimation for RNAseq experiment with more than 2 conditions
SSPA
ssizeRNA
RnaSeqSampleSize
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Megan
• 0
0
votes
1
reply
213
views
Conversion of .sf to .rgel format for the salmon processed files with transcript to gene mapping.
RnaSeqSampleSize
updated 3 months ago by
ATpoint
★ 4.0k • written 3 months ago by
Anudev
• 0
0
votes
1
reply
384
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 6 months ago by
Basti
▴ 770 • written 6 months ago by
Luke
• 0
1
vote
1
reply
246
views
Minimum datasets needed for meta analysis
RnaSeqSampleSize
updated 4 months ago by
Basti
▴ 770 • written 4 months ago by
Durga
▴ 10
7 results • Page
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Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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