Bioconductor RnaSeqSampleSize

Showing : RnaSeqSampleSize • reset

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265

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RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Shaimaa Gamal • 0

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222

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RnaSeqSampleSize

updated 3 months ago by ATpoint ★ 4.0k • written 3 months ago by Anudev • 0

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324

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RNASeqData RnaSeqSampleSize DESeq2

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Mimi • 0

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421

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

4 months ago drewhaydensteele • 0

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252

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RnaSeqSampleSize

updated 5 months ago by Basti ▴ 780 • written 5 months ago by Durga ▴ 10

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389

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 6 months ago by Basti ▴ 780 • written 6 months ago by Luke • 0

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393

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SSPA ssizeRNA RnaSeqSampleSize

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Megan • 0

7 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0