8.2 years ago
kritikamish99
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updated 8.2 years ago by
Welliton de Souza
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written 8.2 years ago by
raya.girish
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updated 7.2 years ago by
Welliton de Souza
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written 7.2 years ago by
paucarrio
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Comment: FilterByExpr low counts with small sample size
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Gordon Smyth
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As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
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Gordon Smyth
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In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
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I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
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0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
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wichaidi
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0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
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