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Rqc
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Rqc for RNA-Seq data
Rqc
8.2 years ago
kritikamish99
▴ 10
3
votes
12
replies
6.1k
views
packages installation problem
limma
Rqc
beadarray
Lumi
updated 8.2 years ago by
Welliton de Souza
▴ 70 • written 8.2 years ago by
raya.girish
• 0
1
vote
2
replies
1.1k
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Rqc aborts with error corrupted double-linked list with valid fastq
Rqc
updated 7.2 years ago by
Welliton de Souza
▴ 70 • written 7.2 years ago by
paucarrio
▴ 10
0
votes
1
reply
456
views
Rbam and Rqc files error
Rqc
rbams
rqc
mmusculus
scanbams
updated 14 months ago by
ATpoint
★ 4.0k • written 14 months ago by
Anushka
• 0
4 results • Page
1 of 1
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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