Showing : Rstudio • reset
9
votes
11
replies
5.6k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 5 weeks ago by 3.8k • written 2.2 years ago by ▴ 40
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
4
votes
5
replies
2.0k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 23 months ago by • 0
3
votes
7
replies
4.5k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade Rstudio Bioconductor R3.2.2
8.4 years ago svlachavas ▴ 830
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
7.5 years ago Jon Bråte ▴ 250
2
votes
5
replies
721
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
5 months ago j_denton • 0
2
votes
1
reply
4.5k
views
Reading fasta file with multiple sequences
multiple sequences bioconductor rstudio seqinr
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
2
votes
3
replies
470
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
4 months ago R_Page • 0
2
votes
4
replies
1.2k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 6.1 years ago by 65k • written 6.1 years ago by ▴ 10
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
2
votes
4
replies
1.6k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 12 months ago by • 0 • written 5.4 years ago by • 0
2
votes
18
replies
3.1k
views
edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
2
votes
4
replies
1.6k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 7.0 years ago by ▴ 650 • written 7.0 years ago by • 0
2
votes
5
replies
5.4k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 830
2
votes
1
reply
8.2k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 20
1
vote
1
reply
4.8k
views
MA plot in R
rstudio r plotMA
6.8 years ago g.k • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.5 years ago Sonia • 0
1
vote
4
replies
1.6k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 6.1 years ago by ★ 6.5k • written 6.1 years ago by • 0
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
1
vote
5
replies
3.9k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.4 years ago by ★ 11k • written 3.4 years ago by • 0
1
vote
3
replies
23k
views
Converting first column to rownames
rstudio
8.1 years ago John ▴ 30
1
vote
3
replies
3.5k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 8.6 years ago by 65k • written 8.6 years ago by ▴ 10
1
vote
3
replies
431
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
6.4 years ago biostR ▴ 10
1
vote
7
replies
2.8k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.0 years ago Abby ▴ 10
0
votes
0
replies
1.0k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
5.9 years ago arphatak • 0
0
votes
1
reply
1.2k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 20
0
votes
0
replies
1.7k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
5.0 years ago fatimarasool135 • 0
0
votes
5
replies
1.6k
views
Using RStudio AMI with localhost
RStudio AWS AMI
4.8 years ago bio-explorer • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
0
votes
1
reply
906
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.1 years ago by 3.8k • written 4.1 years ago by • 0
0
votes
1
reply
823
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
votes
0
replies
613
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
2.5 years ago HELEN • 0
0
votes
2
replies
1.1k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 15 months ago by • 0 • written 17 months ago by • 0
0
votes
4
replies
2.9k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.6 years ago HELEN • 0
0
votes
1
reply
746
views
Issue with installation of a package.
RStudio flowFDA
updated 18 months ago by ▴ 760 • written 18 months ago by • 0
0
votes
3
replies
1.4k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 10
0
votes
1
reply
740
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 2.4 years ago by 65k • written 2.4 years ago by • 0
0
votes
1
reply
812
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 17 months ago by 65k • written 17 months ago by ▴ 430
0
votes
0
replies
220
views
RN to EC Mapping Not Working for Some Nodes
RStudio ggkegg
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
0
replies
1.1k
views
function GDCquery_Maf error
rstudio maftools
2.0 years ago misslubblys • 0
0
votes
14
replies
4.0k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 18 months ago by • 0 • written 21 months ago by • 0
0
votes
1
reply
957
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
votes
1
reply
372
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 8 months ago by ★ 4.0k • written 8 months ago by • 0
0
votes
2
replies
324
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
4 months ago yee • 0
0
votes
7
replies
1.5k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
0
replies
623
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
2.4 years ago HELEN • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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