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Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this:
```
gzip -…
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The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
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You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages.
```
> library(GO.db)
> library(org.Hs.eg.db)
> go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
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I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow.
An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
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an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
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