Bioconductor S4

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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5.1k

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updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by Koen Van den Berge ▴ 180

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975

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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2.6k

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lumi S4

9.1 years ago Chi Hong • 0

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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983

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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s4 methods SummarizedExperiment

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by brendan.innes ▴ 20

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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646

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

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784

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.8k • written 4.1 years ago by muad.abdelhay ▴ 10

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720

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S4 deseq2

updated 5.2 years ago by swbarnes2 ★ 1.3k • written 5.2 years ago by shintzen • 0

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985

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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rnbeads error as.vector(data) s4vectors s4

8.6 years ago schasse • 0

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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826

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

17 results • Page 1 of 1

Recent ...

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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Votes

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k