Bioconductor S4

Showing : S4 • reset

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982

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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823

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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783

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calcium imaging imaging s4

updated 4.0 years ago by shepherl 3.8k • written 4.0 years ago by muad.abdelhay ▴ 10

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645

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class S4

updated 4.1 years ago by Hervé Pagès 16k • written 4.1 years ago by Teun van den Brand • 0

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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975

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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720

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S4 deseq2

updated 5.2 years ago by swbarnes2 ★ 1.3k • written 5.2 years ago by shintzen • 0

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1.0k

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s4 methods SummarizedExperiment

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by brendan.innes ▴ 20

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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983

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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1.7k

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rnbeads error as.vector(data) s4vectors s4

8.6 years ago schasse • 0

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5.1k

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updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by Koen Van den Berge ▴ 180

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2.6k

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lumi S4

9.1 years ago Chi Hong • 0

17 results • Page 1 of 1

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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Comment: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

Or that. ;-D

Answer: Error retrieving ensembl gene id using biomaRt... by Mike Smith ★ 6.5k

I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`

Answer: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…

Comment: DESeq2 setting significant p-value by Michael Love 41k

``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…

Votes

Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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