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S4
•
reset
2
votes
7
replies
2.6k
views
Removing samples from S4 object (in lumi)
lumi
S4
9.1 years ago
Chi Hong
• 0
7
votes
7
replies
5.0k
views
convert S4 DataFrame of Rle objects to sparse matrix
s4
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Koen Van den Berge
▴ 180
2
votes
4
replies
768
views
Does my package fit into bioconductor (and further advice)?
calcium imaging
imaging
s4
updated 4.0 years ago by
shepherl
3.8k • written 4.0 years ago by
muad.abdelhay
▴ 10
15
votes
4
replies
11k
views
How to convert a GRangesList object into a GRanges object?
genomicranges
grangeslist
granges
s4
updated 2.0 years ago by
Hervé Pagès
16k • written 7.8 years ago by
richierocks
▴ 40
0
votes
3
replies
1.0k
views
How to clear a cached S4 method
devtools
S4
methods
cache
5.3 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
937
views
Automatically disconnecting database connections stored within an S4 object
DBI
S4
Biobase
updated 19 months ago by
Hervé Pagès
16k • written 19 months ago by
sandmann.t
▴ 70
2
votes
2
replies
1.1k
views
How to detect and replace zero index in IntegerList ?
iranges
integerlist
s4
7.6 years ago
Jurat Shahidin
▴ 80
3
votes
2
replies
958
views
Proper way to deprecate an S4 generic
s4
generic
updated 5.1 years ago by
Marcel Ramos
690 • written 5.1 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
976
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4
dataframe
left_join
merge
updated 4.9 years ago by
Hervé Pagès
16k • written 4.9 years ago by
Michael Steinbaugh
▴ 90
2
votes
2
replies
629
views
Test wether bioconductor class is linear or rectangular in base R
class
S4
updated 4.1 years ago by
Hervé Pagès
16k • written 4.1 years ago by
Teun van den Brand
• 0
2
votes
2
replies
1.1k
views
How to coerce CompressedIntegerList as vector?
s4
coercion
iranges
integerlist
7.6 years ago
jian_liangli
• 0
2
votes
2
replies
1.0k
views
SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
brendan.innes
▴ 20
1
vote
2
replies
709
views
Remove any rows with 0 count in S4
S4
deseq2
updated 5.2 years ago by
swbarnes2
★ 1.3k • written 5.2 years ago by
shintzen
• 0
2
votes
1
reply
967
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.6 years ago by
Michael Lawrence
★ 11k • written 5.6 years ago by
lukaszbednarz
▴ 10
0
votes
1
reply
796
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.8 years ago by
Aaron Lun
★ 28k • written 3.8 years ago by
lklei001
• 0
0
votes
1
reply
1.7k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
8.6 years ago
schasse
• 0
0
votes
0
replies
1.3k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
7.7 years ago
anara92
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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