Biostar SAM

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4.4k

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bam sam alignment biostrings

7.3 years ago ben.ward ▴ 30

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1.9k

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Limma SAM differential expression

updated 7.5 years ago by James W. MacDonald 59k • written 7.5 years ago by Bade ▴ 310

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843

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samr SAM siggenes bioconductor differential gene expression

7.3 years ago svlachavas ▴ 780

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1.0k

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r SAM bioconductor

updated 7.4 years ago by Simon Anders ★ 3.7k • written 7.4 years ago by svlachavas ▴ 780

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276

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microarray SAM

updated 3.0 years ago by James W. MacDonald 59k • written 3.0 years ago by xgt1986627 ▴ 10

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852

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SAM siggenes microarray gene expression sam

5.4 years ago • updated 5.3 years ago Brian Smith ▴ 120

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1.2k

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featurecounts SAM htseqcounts

5.0 years ago courtney.stairs • 0

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905

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differential gene expression sam

updated 6.1 years ago by Aaron Lun ★ 27k • written 6.1 years ago by cirisarri95 • 0

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954

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DEXSeq splicing python SAM

6.6 years ago Fiona ▴ 70

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508

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SAM samtools pairwisealignment alignment blastn

3.8 years ago ktehmsen • 0

10 results • Page 1 of 1

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Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

Any help on why `pcoverageByTranscript` generate such errors? thanks.

Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by Hervé Pagès 15k

And also please don't ignore these warnings: 1: package ‘GenomicFeatures’ was built under R version 4.1.1 2: package ‘BiocGenerics’ was b…

Comment: broken chain import in liftOver by Marcel Ramos 570

You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated. by James W. MacDonald 59k

See `removeBatchEffect` in the `limma` package.

Comment: GDCdownload Directory Problem :( by Marcel Ramos 570

FWIW, `TCGAutils` is not a related package.

Votes

Answer: broken chain import in liftOver

Answer: toGRanges help!

Comment: CPM after RUVseq

A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res

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