Showing : SAM • reset
5
votes
8
replies
7.5k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam sam alignment biostrings
11.1 years ago ben.ward ▴ 30
0
votes
5
replies
3.1k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 2.7 years ago by ▴ 450 • written 8.8 years ago by • 0
2
votes
4
replies
1.8k
views
Interprentation of appropriate statistical test
samr SAM siggenes bioconductor differential gene expression
11.1 years ago svlachavas ▴ 840
4
votes
4
replies
3.2k
views
Two-class unpaired test using LIMMA
Limma SAM differential expression
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 310
0
votes
3
replies
1.9k
views
Implementation of SAM statistical technique in R
r SAM bioconductor
updated 11.2 years ago by ★ 3.8k • written 11.2 years ago by ▴ 840
1
vote
2
replies
817
views
How to get the final value of the after an automatic method in SAM
microarray SAM
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
2
votes
2
replies
2.0k
views
SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
9.2 years ago Brian Smith ▴ 120
1
vote
1
reply
1.8k
views
How to get diff expresion results from sam files
differential gene expression sam
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
0
votes
0
replies
1.8k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM samtools pairwisealignment alignment blastn
7.6 years ago ktehmsen • 0
0
votes
0
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2.0k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
10.4 years ago Fiona ▴ 70
10 results • Page 1 of 1
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Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230
Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0
Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k
> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…
Answer: Is it still possible to do batch correction for my data? by James W. MacDonald 68k
The balance doesn't matter. What does matter is that you have samples nested in batch, in which case you cannot reliably distinguish techni…
Votes
DiffBind dropping peaks in ATAC-seq data
A: decideTests() options in LIMMA
A: Removing cell cycle genes in large data set integration
A: Removing cell cycle genes in large data set integration
Answer: Quick two questions on limpa
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