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SAM
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reset
2
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2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
7.2 years ago
Brian Smith
▴ 120
2
votes
4
replies
1.2k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
5
votes
8
replies
6.0k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
9.1 years ago
ben.ward
▴ 30
1
vote
1
reply
1.3k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
cirisarri95
• 0
2
votes
2
replies
477
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
xgt1986627
▴ 10
0
votes
3
replies
1.4k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 9.2 years ago by
Simon Anders
★ 3.7k • written 9.2 years ago by
svlachavas
▴ 830
4
votes
4
replies
2.4k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
Bade
▴ 310
0
votes
5
replies
2.2k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 8 months ago by
Yang Liao
▴ 380 • written 6.9 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.1k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.6 years ago
ktehmsen
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
10 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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