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SAM
•
reset
5
votes
8
replies
6.0k
views
Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam
sam
alignment
biostrings
9.2 years ago
ben.ward
▴ 30
4
votes
4
replies
2.5k
views
Two-class unpaired test using LIMMA
Limma
SAM
differential expression
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
Bade
▴ 310
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 9 months ago by
Yang Liao
▴ 380 • written 6.9 years ago by
courtney.stairs
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM
siggenes
microarray
gene expression
sam
7.3 years ago
Brian Smith
▴ 120
0
votes
3
replies
1.4k
views
Implementation of SAM statistical technique in R
r
SAM
bioconductor
updated 9.3 years ago by
Simon Anders
★ 3.7k • written 9.3 years ago by
svlachavas
▴ 830
1
vote
1
reply
1.3k
views
How to get diff expresion results from sam files
differential gene expression
sam
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
cirisarri95
• 0
2
votes
4
replies
1.3k
views
Interprentation of appropriate statistical test
samr
SAM
siggenes
bioconductor
differential gene expression
9.2 years ago
svlachavas
▴ 830
0
votes
0
replies
1.1k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.7 years ago
ktehmsen
• 0
2
votes
2
replies
491
views
How to get the final value of the after an automatic method in SAM
microarray
SAM
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
xgt1986627
▴ 10
10 results • Page
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Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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