updated 9 weeks ago by
Andrew_McDavid
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written 9 weeks ago by
james.watson1
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Answer: Feature Counts - potential bug with outfile.jcounts
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Gordon Smyth
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The behavior you have documented in not surprising and is explained in the featureCounts documentation.
The first thing to understand is t…
Answer: Feature Counts -R XS Read Assignment Tag
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Gordon Smyth
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I am not very familiar with this part of the featureCounts code, but I do not think it would be at all practical or desirable for featureCo…
Comment: Margins for gene_set_enrichment_plot
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Leonardo Collado Torres
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1.1k
Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …
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James W. MacDonald
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Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…
Comment: DESeq2 - Comparing Comparisons
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sk
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Hi James,
Thank you for your response! Quick follow-up; if I structure my contrast as below, will it perform (A-B) - (C-D)?
res_diff <…
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